<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Protease Inhibitors

Subtype A
Gene PR
Mutation M36I
Rx >= 1 PI
IncludeMixtures No
References 45
Patients 231
Isolates 260
 
Show mutation frequency as:
Exclude mutations:

Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# PIs WksPIMajorDRMs PIMinorDRMs OtherMutSubtype
Gonzales (2001)CA6428CA16183AF331690NFV41  I13V, K14R, I15V, E35D, M36I, R41K, L63M, H69K, L89MA
  CA24095 NFV, LPV123  I13V, E35D, M36I, R41K, L63M, H69K, L89MA
Weidle (2001)PW_UG4399PW_UG4399a RTV69V82AL33FL10V, I13V, K20R, E35D, M36I, R41K, R57K, C67Y, H69K, L89MA
 PW_UG463PW_UG463a IDV13  I13V, E35D, M36I, R41K, L63Q, H69K, L89MA
 PW_UG471PW_UG471aAY900678SQV13  I13V, G16E, K20R, E35D, M36I, R41K, R57K, H69K, K70R, L89MA
 PW_UG473PW_UG473AF358758RTV40  I13V, K20I, E35D, M36I, R41K, H69K, L89MA
 PW_56PW_56AY900821SQV, IDV61 L89MVI13V, K14R, K20I, E35D, M36I, R41K, I62IV, H69K, T74TSA
Yahi (2001)NY_M29M29AY010392IDV M46I, I54V, V82F L10I, I13V, I15V, K20KI, E35D, M36I, R41K, D60E, I62IV, H69Q, L89IA
 NY_M35M35AY010399NFV M46I, L90M L10I, I13V, K14R, G16E, K20I, E35DN, M36I, I62IV, L63S, C67D, H69R, I72T, L89M, I93IMA
 NY_M36M36AY010400NFV   G16A, E35D, M36I, R41K, H69K, L89MA
 NY_M71M71AY010433IDV   L10V, I13V, K14R, G16E, E35D, M36I, R41K, R57K, H69K, L89MA
 NY_M72M72AY010434IDV M46MI, I84V I13V, K20I, E35D, M36I, R41K, L63P, H69K, A71V, L89TA
 NY_M73M73AY010435IDV   L10V, I13V, K14R, G16E, K20KI, E35D, M36I, R41K, R57K, H69K, T74TA, L89MA
Gibb (2002)DMG102102_w51 NFV52 V32LI13V, E35D, M36I, R41K, K45R, R57K, L63P, H69K, L89MA
 DMG106106_w41 NFV41M46LN83DI13V, G16A, K20R, A22V, E35D, M36I, R41K, R57K, I64IV, H69K, L89MA
  106_w43 NFV43  I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89MA
 DMG1616_w16 NFV15  I13V, K14R, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89MA
  16_w32 NFV30  I13V, K14R, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89MA
 DMG6565_w9 NFV9  I13V, G16A, K20R, E35D, M36I, R41K, R57K, H69K, A71AV, L89MA
 DMG6868_w27 NFV27M46MI I13V, G16A, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
  68_w30 NFV30  I13V, G16A, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 DMG7070_w27 NFV27  I13V, G16E, E35D, M36I, R41K, L63V, G68GE, H69K, L89M, T91V, I93LA
 DMG7777_w19 NFV14  I13V, E35D, M36I, R41K, R57K, H69K, L89MA
  77_w42 NFV37  I13V, E35D, M36I, R41K, R57K, H69K, L89MA
  77_w67 NFV59  I13V, E35D, M36I, R41K, R57K, H69K, L89MA
 DMG8686_w71 NFV54  I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89MA
 DMG9898_w29 NFV29  I13V, E35D, M36I, R41K, K45R, R57K, L63P, H69K, L89MA
  98_w55 NFV55  I13V, K20R, E35D, M36I, N37D, R41K, Q61QE, H69K, I72IV, L89MA
Maguire (2002)SW32381SW32381AY900671APV48M46L, I54L L10I, I13V, K20R, M36I, N37D, R41K, L63V, H69KA
Papa (2002)16GR16AF385360IDV M46I, N88SK43T, L89VI13V, K20I, E35DG, M36I, N37D, R41K, I62IV, H69K, A71TA
Vergne (2002)LV04BLV04BAJ313406IDV74  I13V, G17E, K20I, M36I, N37D, L63P, H69K, K70R, L89MA
Holguin (2003)SP_LP5SP_LP5AF455604PINA  L10I, I13V, K14R, E35D, M36I, R41K, L63V, H69K, L89MA
Shafer (2003)A384_09830983bEF548169NFV43  L10V, I13V, K20T, E35D, M36I, R41K, R57K, H69K, L89M, I93MA
Vergne (2003)VL00SN69HPD00SN69AJ583752IDV I84VG73SI13V, E35D, M36I, R41K, K45R, R57K, L63P, H69K, A71V, L89TA
Weber (2003)3MIRIS3M-24AY140812SQV, RTV22  I13V, E35D, M36I, R41K, H69K, L89MA
 5WIRIS5W-48AY140814IDV48  L5F, I13V, E35D, M36I, R41K, R57K, H69K, L89MA
 SIIRIS6I-48AY140815SQV, RTV52  I13V, E35D, M36I, R41K, R57K, H69K, V77I, L89MA
Gomez-Carrillo (2004)103396103396AY365678PINAI54V I13V, K20I, E35D, M36I, N37D, R41K, I62V, L63V, I66F, G68E, H69R, L89M, T91VA
 104575104575AY365707PINA  I13V, E35D, M36I, N37D, R41K, L63V, H69K, K70R, L89IM, T91VA
 111780111780AY365851PINA  I13V, E35D, M36I, N37D, R41K, L63V, H69K, K70R, L89M, T91VA
Grossman (2004)IL88IL88AY529535NFV65  A22R, E35D, M36I, R41K, H69K, L89M, I93LA
 IL351IL351AY529589NFV226M46IQ58QEI13V, K14KR, K20KR, E35ED, M36I, N37ND, R41K, H69K, L89I, I93LA
Montes (2004)MB_patSAA00_SAA713AJ577989NFV, SQV21  L10I, I13V, I15V, E35D, M36I, R41K, H69K, L89MA
  01_SAA704AJ577990NFV, SQV21  L10I, I13V, I15V, E35D, M36I, R41K, H69K, L89MA
 MB_patBES00_BES703AJ577738SQV104  I13V, I15S, G16R, G17R, E35D, M36I, R41K, R57K, H69K, L89MA
  02_BES706AJ577740SQV, RTV108  I13V, K14R, I15V, E35D, M36I, R41K, R57K, H69K, L89M, G94AA
 MB_patELA02_ELA701AJ577884SQV, RTV, Unknown>25  I13V, G16E, E35D, M36I, R41K, L63A, G68E, H69K, K70R, L89I, T91V, I93LA
 MB_patSAN01_SANC718AJ577992SQV, IDV, RTV143M46I, I84V, L90MG73S, L89VL10V, I13V, G16A, K20R, E35D, M36I, N37E, R41K, D60E, I62V, L63P, H69KA
 MB_patMUZ00_MUZ714AJ577959NFV18 L10FI13V, E35D, M36I, R41K, R57K, H69K, L89IA
 MB_patROI00_ROI705AJ577983SQV, RTV, IDV193  I13V, G16E, K20R, M36I, R41K, L63N, H69K, K70R, L89I, T91V, I93LA
Non-B Workgroup (2005)UK847bUK847bAY900783NFV, LPV   I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89MA
 UK1436UK1436AY900801SQV, RTV, NFV123 N83DI13V, K14R, K20R, A22V, E35D, M36I, R41K, R57K, H69K, L89I, T91AA
 UK1516UK1516 PI, LPVNAI54L L10I, I13V, G16E, K20T, E35D, M36I, R41K, R57K, L63T, H69K, T74S, V82VI, I85V, L89MA
 IL276IL276 IDV81  L10I, E35D, M36I, R41K, R57K, L63T, H69R, L89M, I93LA
 UK2088UK2088 RTV V82F I13V, K14R, I15V, K20R, E35D, M36I, R41K, I62V, L63LP, H69K, T74TS, L89I, L97LSA
 UK2149UK2149AY900859Unknown, LPVNAM46I, L76V, I84VL33I, N83DL10I, I13V, A22V, E35D, M36I, N37D, R41K, K45R, R57K, L63P, A71V, L89IA
 PL972860099AY901076IDV, RTV, ATV I54V, V82AL33I, F53L, N83DL10Y, I13V, G16E, K20R, A22AV, E35DN, M36I, N37ND, R41RK, L63T, H69K, T74S, L89M, T91AA
 TK1001TK1001 IDV129  L10I, I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89MA
  TK1001a IDV179V82A L10I, I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89IA
 TK1005TK1005 RTV, IDV, NFV201  I13V, E35D, M36I, N37ND, R41K, R57RK, L63LI, H69K, L89MA
 TK1010TK1010a IDV, Unknown>229 L10FT12I, I13V, G16E, E35D, M36I, R41K, R57K, H69K, K70R, L89MA
  TK1010b IDV, Unknown>229 L10FT12I, I13V, G16E, E35D, M36I, R41K, R57K, I62V, L63H, H69K, K70R, L89MA
 TK1025TK1025 IDV, LPV180  I13V, I15V, E35D, M36I, R41K, K45R, R57K, Q61E, I64M, H69K, K70Q, I72IV, L89MA
 TK1030TK1030 SQV, RTV, IDV146  L10I, I13V, G16E, E35D, M36I, R41K, R57K, L63S, H69K, L89MA
  TK1030a SQV, RTV, IDV305  L10V, I13V, G16GE, E35D, M36I, R41K, R57K, L63PS, H69K, L89MA
 TK2002TK2002 IDV, RTV273M46MI, V82ATL33I, N83DL10LI, I13V, K14R, A22AV, E35D, M36I, R41K, R57K, H69K, L89IMA
 TK2004TK2004 IDV181  I13V, K20R, E35D, M36I, R41K, R57K, H69K, K70R, L89MA
 TK2007TK2007 SQV, RTV69  I13V, E35D, M36I, N37ND, R41K, K45R, R57K, H69K, L89MA
 TK2012TK2012 RTV, IDV, SQV186I54V, L90M L10V, I13V, K14R, I15V, K20R, E35D, M36I, R41K, R57K, I62V, H69K, T74S, L89IA
 TK2017TK2017 NFV35  I13V, E35D, M36I, R41K, R57K, H69K, V77I, L89MA
 TK2021TK2021 NFV88  I13V, I15V, E35D, M36I, R41K, R57RK, H69K, K70R, L89MA
 TK2022TK2022 SQV, RTV12  L10X, I13V, I15IV, L19LI, E35D, M36I, R41K, R57K, L63X, H69K, L89MA
 TK2027TK2027 IDV, RTV90  I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89MA
 TK2029TK2029 IDV39  L10I, I13V, K14R, G16GE, E35D, M36I, R41K, K45R, R57K, L63P, H69K, V77I, L89MA
 TK3001TK3001 SQV90L90ML33FI13V, K14R, K20T, M36I, R41K, K43N, R57K, H69K, V82I, I85V, L89MA
 TK3017TK3017 RTV174L90M L10V, I13V, G16E, K20R, E35D, M36I, R41K, L63T, H69K, L89MA
  TK3017a RTV222L90M L10V, I13V, G16E, K20R, E35D, M36I, P39PS, R41K, L63T, H69K, L89MA
  TK3017b RTV230L90M L10V, I13V, G16E, K20R, E35D, M36I, P39PS, R41K, L63T, H69K, L89MA
  TK3017c RTV249L90M L10V, I13V, G16E, K20R, E35D, M36I, P39PS, R41K, L63T, H69K, L89MA
 TK3029TK3029 SQV, NFV149L90M L10V, I13V, K20T, E35D, M36I, R41K, H69K, T74S, L89IA
  TK3029a SQV, NFV, LPV207  I13V, E35D, M36I, R41K, H69K, L89MA
 TK3030TK3030 SQV, NFV250  I13V, E35D, M36I, N37NT, R41K, K45R, R57K, H69K, L89M, I93IMA
  TK3030a SQV, NFV312I54IL, L90LM I13V, K20RT, E35D, M36I, N37NT, R41K, K45KR, R57K, H69K, A71AV, L89I, I93IMA
 TK3033TK3033 NFV1  I13V, I15IV, E35D, M36I, R41K, R57K, H69K, L89MA
  TK3033a NFV1  I13V, K20KR, E35D, M36I, R41K, R57K, H69K, L89MA
 TK4003TK4003 NFV116 N83DL10V, I13V, K14R, G16E, E35D, M36I, R41K, K45R, R57K, L63T, H69K, K70R, L89M, I93LA
  TK4003a NFV215I54VL33I, N83DL10V, I13V, K14R, G16E, A22V, E35D, M36I, R41K, K45R, L63T, H69R, K70R, L89IA
 TK4006TK4006 NFV83N88SL10FI13V, I15V, K20I, E35N, M36I, R41K, K45R, R57Q, H69K, L89IA
 TK4007TK4007 NFV178M46I I13V, E35D, M36I, R41K, R57K, L63P, H69K, A71AV, L89TA
 TK4009TK4009 IDV336  I13V, K14R, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93LA
 TK4012TK4012 SQV, RTV4  K14R, E35D, M36I, N37D, R41K, R57K, H69K, L89MA
 TK4013TK4013 SQV, RTV, NFV213  I13V, K14R, I15V, E35D, M36I, R41K, R57K, H69K, L89MA
 TK5002TK5002 NFV189N88SL10FI13V, K14R, I15V, K20T, E35D, M36I, R41K, K45R, R57K, H69K, L89IA
 TK5005TK5005 SQV, IDV, RTV, NFV, LPV180G48V, I54T, V82A, L90M L10I, I13V, K14R, G17D, K20R, E34N, E35D, M36I, R41K, R57K, D60E, I62V, L63P, H69K, A71V, L89IA
  TK5005a SQV, IDV, RTV, NFV, LPV196G48V, I54T, L90M L10I, I13V, K14R, G17D, K20R, E34N, E35D, M36I, R41K, R57K, D60E, I62V, L63P, H69K, A71IV, L89I, I93IMA
 TK5008TK5008 IDV93  I13V, G16E, K20R, E35D, M36I, R41K, R57K, H69K, K70R, L89MA
 TK5011TK5011 IDV34  L10V, I13IV, K14KR, E35D, M36I, R41K, R57K, H69K, L89MA
 TK5012TK5012 IDV54  L10I, I13V, K14R, G16E, K20R, E35D, M36I, R41K, L63T, H69K, L89MA
  TK5012a IDV, LPV152  L10I, I13V, K14KR, G16E, K20R, E35D, M36I, R41K, L63T, H69K, L89MA
  TK5012b IDV, LPV191  L10IV, I13V, K14KR, G16E, K20R, E35D, M36I, R41K, L63T, H69K, L89MA
  TK5012c IDV, LPV215  L10I, I13V, K14KR, G16E, K20R, D25DG, E35D, M36I, R41K, L63ST, H69K, L89MA
 PL4311075401 IDV208  K20R, E35D, M36I, N37D, R41K, I62V, L63T, H69K, L89MA
Weber (2005)F76135F76135AY677380RTV65  Q7QH, T12V, K14R, K20R, E21K, E35D, M36I, N37D, R41K, R57K, L63V, H69K, L89MA
 F45753F45753AY677422SQV, NFV258  L10I, I13V, G16E, K20R, E35D, M36I, P39S, R41K, H69K, L89MA
 M76115M76115AY677424LPV19  I13V, I15V, E35D, M36I, N37E, R41K, K45R, R57K, H69K, L89MA
 M49551M49551AY677385RTV96  T4TP, I13V, G16E, E35D, M36I, R41K, H69K, L89MA
 M50457M50457AY677433NFV94  L10I, T12S, I13V, K14KR, I15IV, K20I, E35D, M36I, N37S, R41K, K45R, H69K, A71V, L89TA
 F46097F46097AY677388NFV, SQV, RTV148  T4TP, I13V, K14R, Q18QH, E35D, M36I, R41K, R57K, L63P, H69K, L89MA
 F51354F51354AY677444SQV, NFV115  L10V, I13V, K14R, G16E, K20T, E35D, M36I, R41K, R57K, L63T, H69K, I72T, T74TA, L89MA
 M36781M36781-2AY714402Unknown, LPV>8  I13V, G16E, E35D, M36I, R41K, K45R, R57K, H69K, I72K, L89MA
 F65588F65588AY677449NFV46  I13V, E35D, M36I, R41K, K45R, R57K, H69K, V82I, L89MA
 F57352F57352AY677463NFV145L90LM L10LV, I13V, I15V, K20KT, E35D, M36I, R41K, K45KQ, I62IV, H69K, T74TK, L89IMA
 M41971M41971AY677401IDV, NFV, LPV181I54V, V82AL10F, L33IT4TS, I13V, G16E, L19LI, K20R, E35D, M36I, N37D, R41K, K45V, K55T, R57K, L63H, H69K, K70R, L89M, T91TSA
 F87084F87084AY677406IDV28  L10I, I13V, K14R, G16E, E35D, M36I, R41K, R57K, L63V, H69K, L89MA
 F73291F73291AY677477NFV195M46LL33I, N83DL10V, I13V, A22V, E35D, M36I, R41K, I62V, L63PS, H69K, T74S, L89I, I93LA
 F78596F78596AY677480IDV18  L10I, I13V, I15L, K20I, E35D, M36I, L63S, H69K, L89MA
 M47502M47502AY677409NFV51N88NS L10I, I13V, K20KT, E35ED, M36I, R41K, L63T, I64IV, H69K, L89MA
 M41984M41984AY677484IDV139 L33FI13V, K14R, E35D, M36I, R41K, K43KR, R57K, H69K, L89MA
 89M262689M2626AY677414SQV, NFV, RTV261I54V, L90MF53L, L89VL10I, I13V, K14R, K20I, E35D, M36I, N37E, R41K, R57K, H69K, A71V, T74SA
 F40883F40883AY714449NFV, Unknown, LPV>105  I13V, I15V, K20KR, E35D, M36I, R41K, R57K, H69K, L89MA
 F56706F56706AY714473SQV, RTV153  T12A, I13V, E35D, M36I, N37D, R41K, R57K, D60E, H69K, L89MA
Baxter (2006)12-21202120-30715DQ876783PINAM46I, I47V, L90ML10F, L33I, F53L, G73GS, N88G, L89VI13V, K14R, K20T, E35D, M36I, R41K, R57K, I62V, L63P, H69K, A71IA
  2120-40510DQ876754PI, RTV, TPV>43M46I, I47V, L90ML10F, L33I, F53L, G73S, N88G, L89VI13V, K14R, K20T, E35D, M36I, R41K, R57K, I62V, L63P, H69K, A71IA
 48-12021202-30702DQ877746PINAI54V, V82A, L90ML33F, N83DI13V, G16E, K20R, E35D, M36I, N37D, R41K, R57RK, L63N, H69K, K70R, L89I, T91V, I93LA
 48-12531253-30605DQ877778PINA  L10V, T12TP, I13V, K14R, G16E, K20R, E35D, M36I, R41K, R57RK, Q61QE, I62IV, L63CS, H69K, L89MA
 48-33163316-30818DQ878217PINAI54A, V82F L10I, T12TK, I13V, G16A, L19LV, K20I, E35N, M36I, R41K, D60E, L63P, H69K, T74S, V77I, L89MA
 48-41534153-30326DQ878387PINAM46I, I54L, L76V, I84VL10FI13V, G16E, K20I, L33L_L, E35D, M36I, R57K, Q61R, L63T, H69K, L89I, T91TSA
 48-41864186-30408DQ878420PINAI54V, V82AL24I, L33I, Q58E, N83DL10I, I13V, G16E, K20R, A22V, E35D, M36I, N37D, R41K, L63T, H69K, I72V, T74A, L89M, T91V, I93LA
 48-42024202-30804DQ878434PINA  L10V, I13V, K14KR, I15V, G16E, E35D, M36I, R41K, K45R, L63T, H69KA
 48-42174217-30915DQ878451PINAM46L, I54V, I84V, L90ML33F, K43T, N88GL10I, I13V, K14R, K20R, E21Q, E35D, M36I, N37D, Q61N, I62V, L63Q, H69K, A71L, T74S, Q92R, I93MA
 48-50055005-30422DQ878538PINAI54IATV, V82VA, L90LML33LFL10LI, I13V, K14KR, L19LI, K20KR, E35D, M36I, R41K, K45R, R57K, L63P, H69K, L89IMA
 48-50105010-30820DQ878543PINAM46MIL, I54V, V82AQ58EL10I, I13V, K20KR, E35D, M36I, N37ND, R41K, I62V, L63P, A71TA
 48-50215021-30606DQ878555PINAI54V, V82F, I84IV, L90ML33F, F53LL10I, V11L, I13V, I15V, G16E, L19P, K20I, E35N, M36I, K45V, L63T, H69K, L89MA
 48-50315031-30421DQ878557PINAM46I, I54V, V82AG73SI13V, I15V, K20I, E35D, M36I, Q61H, L63D, H69K, A71V, L89TA
 48-50325032-30421DQ878558PINAI54V, L90ML10F, L33I, L89VI13V, E35D, M36I, R41K, R57K, I62IV, L63LP, H69KA
 48-50355035-30421DQ878561PINA  T12P, I13V, K14R, E35D, M36I, R41K, K45R, R57K, L63P, H69K, K70R, L89MA
 48-80538053-30818DQ879078PINAM46L, G48V, I54S, V82AL33I, F53LL10I, I13A, K14N, A22V, E35D, M36I, K55R, R57K, I62V, L63P, H69K, K70KR, T74S, L89IA
Laurent (2006)CK2-7502CM-75AM279446IDV39  L10V, I13V, I15V, E35D, M36I, R41K, R57K, D60E, H69K, L89MA
 CK22-3503CM2-35AM279456IDV74I54IV, V82AL33LIL10I, I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89TA
Saad (2006)MDS_02UAKV12502UAKV125DQ055293SQV   I13IV, G16GA, E35D, M36I, R41K, H69K, L89M, I93LA
Tee (2006)MYKL185504MYKL1855AY960955LPV I54V, V82FL33I, L89VL10I, I13V, Q18H, A22V, E35D, M36I, N37D, H69K, A71V, I93MA
Seyler (2007)265CS_265 IDV66  L10V, I13V, L19P, K20I, M36I, R41K, K43R, L63LP, H69K, L89MA
 293CS_293 NFV150N88NSV11VIL10M, T12TA, I13V, K14R, G16E, K20KI, E35D, M36I, R41K, K43KR, H69K, I72IR, L89MTA
 483CS_483 NFV162  L10V, I13V, G16GE, E35D, M36I, R41K, H69K, K70R, L89MA
von Wyl (2007)2710528715EF449796PINA  I13IV, K14KR, I15IV, E35D, M36I, R41K, L63T, H69K, L89MA
 85495945EF449807PINA  L10V, I13V, E35D, M36I, R41K, H69K, L89MA
 1345191462EF449882PINA  L10V, I13V, E35D, M36I, R41K, K45R, R57K, L63V, L89MA
 13662529EF449971PINA  I13V, I15V, E35D, M36I, R41K, R57K, H69K, T74S, L89MA
Gody (2008)Pt047Pt047 IDV   L10V, I13V, G16E, E35D, M36I, N37D, L63AS, H69K, I72V, L89MA
Rosen-Zvi (2008)3901p39-1 RTV, IDV, LPV138  I13V, E35D, M36I, R41K, K45R, L63LP, H69K, L89MA
  03p39-2 RTV, IDV, LPV248  I13IV, E35D, M36I, R41K, K45R, L63LP, H69K, L89MA
  08p39-3 RTV, IDV, LPV, ATV479  E35D, M36I, R41K, K45R, L63P, H69K, A71T, L89MA
Sylla (2008)A2868A2868_C1EF525663IDV   L10I, I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, I72R, L89MA
Koyalta (2009)17TCHAD-17FJ688177IDV26M46I, I84V L10I, I13V, K14R, I15V, K20I, M36I, R41K, R57K, L63P, I66F, H69N, I72V, L89IA
 33TCHAD-33FJ688184IDV26  L10I, I13V, G16A, K20I, E35D, M36I, R41K, H69Q, L89MA
Rhee (2009)CA6428CA21387FJ983200NFV91  I13V, E35D, M36I, R41K, L63M, H69K, L89MA
Steegen (2009)BV114BV114-1EU872122LPV4  I13V, G16E, K20R, E35D, M36I, R41K, Q61H, L63T, G68E, H69K, K70R, V82I, L89M, T91V, I93LA
 BV223BV223-1EU872135LPV4  I13V, E35D, M36I, P39Q, R41K, L63P, H69K, L89MA
Thomson (2009)SP_B_005RU_SP_B_005FJ009783RTV, IDV, APV, LPV   K14R, G16GE, E35D, M36I, R41K, H69K, V77I, L89M, I93ILA
 SP_B_008RU_SP_B_008FJ009786LPV   L10LI, I13V, K14R, M36I, R41K, H69K, L89MA
 SP_B_028RU_SP_B_028FJ009793NFV   L10LI, I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M, I93ILA
 SP_B_029RU_SP_B_029FJ009794LPV, NFV25  K14R, E35D, M36I, R41K, H69K, L89M, I93LA
 SP_B_031RU_SP_B_031FJ009796LPV, IDV160  K14R, E35D, M36I, N37D, R41K, H69K, L89MA
 SP_B_043RU_SP_B_043FJ009804LPV47  K14R, E35D, M36I, R41K, H69K, L89MA
 SP_B_051RU_SP_B_051FJ009809DRV4  I13V, I15V, E35D, M36I, R41K, H69K, V77I, L89M, I93LA
 SP_B_057RU_SP_B_057FJ009812RTV, IDV, LPV29  L10I, E35D, M36I, R41K, H69K, L89MA
Dau (2010)10412A10412AGU582000PINA  L10V, I13V, E35D, M36I, R41K, L63V, I64V, H69KA
 11741A11741AGU582052PINAN88SL10F, L89VI13V, K20T, E35D, M36I, R41K, I62V, L63P, H69K, T74SA
Hamkar (2010)2Ir-HIV-DR-02GU724805PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 3Ir-HIV-DR-03GU724806PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 6Ir-HIV-DR-06GU724809PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 7Ir-HIV-DR-07GU724810PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 8Ir-HIV-DR-08GU724811PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 9Ir-HIV-DR-09GU724812PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 11Ir-HIV-DR-11GU724814PINA  T12K, I13V, K14I, L19Q, K20R, E35D, M36I, R41K, G49E, R57K, H69K, L89MA
 12Ir-HIV-DR-12GU724815PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 14Ir-HIV-DR-14GU724817PINA  I13V, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 15Ir-HIV-DR-15GU724818PINA  I13V, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 17Ir-HIV-DR-17GU724820PINA L23IQ2H, T12P, K14R, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93F, T96PA
 19Ir-HIV-DR-19GU724822PINA  I13V, L19Q, K20R, E35D, M36I, R41K, R57K, C67Y, H69K, L89MA
 21Ir-HIV-DR-21GU724824PINA  I13V, L19Q, K20R, E35D, M36I, R41K, R57K, C67Y, H69K, L89MA
 24Ir-HIV-DR-24GU724827PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 25Ir-HIV-DR-25GU724828PINA  I13V, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 28Ir-HIV-DR-28GU724831PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 30Ir-HIV-DR-30GU724833PINA  T12P, K14R, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93LA
 31Ir-HIV-DR-31GU724834PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 34Ir-HIV-DR-34GU724837PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 35Ir-HIV-DR-35GU724838PINA  I13V, K14I, L19Q, K20R, E35D, M36I, R41K, R57K, H69K, L89MA
 37Ir-HIV-DR-37GU724840PINA  I13V, K14I, L19Q, K20R, E35D, M36I, N37F, R41K, R57K, E65G, I66V, H69K, L89MA
 38Ir-HIV-DR-38GU724841PINA  I13V, K14I, L19Q, K20R, A28P, E35D, M36I, R41K, R57K, H69K, L89MA
 40Ir-HIV-DR-40GU724843PINA  I13V, L19Q, K20R, E35D, M36I, R41K, R57K, C67Y, H69K, L89MA
 42Ir-HIV-DR-42GU724845PINA  I13P, K14I, L19Q, K20R, G27P, E35D, M36I, R41K, R57K, H69K, P81G, L89MA
Charpentier (2011)8CP 001-259 Unknown, LPVNA  L10LI, K14KR, E35D, M36I, R41K, I62IV, L63AV, I64IL, H69K, K70KR, I72IV, L89MA
 32CP 001-144 Unknown, LPVNA  I13V, K14R, G17E, K20I, E34K, M36I, N37D, P39M, L63T, I64M, H69K, K70KR, I72T, L89MA
 51CP 001 2273 Unknown, LPVNA  T12P, I13V, G16E, K20R, E35D, M36I, R41K, K55K*, L63T, E65EG, G68GE, H69KR, L89MA
Charpentier (2011)CR-50CR-50FJ688256PINAM46IL10FK20I, E35D, M36I, N37D, R41K, I62IV, L63T, H69K, T74A, V77VI, I85IV, L89M, I93LA
 CR-13CR-13FJ688219PINAM46IL10F, L89VI13V, K20I, M36I, R41K, L63LP, H69K, I93MA
Barber (2012)5085750857JQ361664LPV M46I, L76V, I84V L10I, I13V, G16E, M36I, R41K, L63T, H69K, L89MA
 4882648826JQ361679LPV V32I, M46I, I47AL10F, L33I, L89VI13V, K20R, E35D, M36I, R41K, R57K, I62V, H69K, K70R, T74SA
 6778467784JQ361691LPV I54V I13V, G17D, K20R, E35D, M36I, R41K, R57K, D60E, I62V, L63I, H69K, L89MA
Dvali (2012)R045R045GQ268451NFV M46MI I13V, K14R, G16E, E35D, M36I, R41K, E65EK, H69K, I72IT, L89M, I93ILA
 R126R126GQ268514NFV M46MI L10LI, I15IV, E35D, M36I, R41K, H69K, L89M, I93LA
 R005R005FJ456894NFV M46MI, N88NSL23LI, K43KTK14R, I15IV, K20T, E35D, M36I, N37D, R41K, L63P, H69K, A71AV, L89M, I93LA
El Annaz (2012)929929.PRJN185233PINA  L10V, I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93ILA
 13281328.PRJN185236PINA  L10I, I13V, E21Q, E35D, M36I, R41K, H69K, L89MA
 14291429.PRJN185237PINA  L10V, I13V, K14R, I15V, M36I, L63P, H69K, L89MA
 18771877.PRJN185240PINA  L10V, I13V, I15V, M36I, L63P, H69K, L89MA
 52185218.PRJN185254IDV52  L10V, I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89MA
Jones (2012)159797159797JN669961PINAM46I, I54V, L76V, V82AL33LFL10I, I13V, I15IV, G16E, K20M, E35D, M36I, R41K, K55R, R57K, Q61N, A71T, I72R, L89IA
 160444160444JN669977PINAI54IVL10F, F53FLI13V, E35D, M36I, N37D, R41K, L63V, H69K, K70R, T74A, L89M, T91VA
 178278178278JN670478PINAI54V, V82VA, L90LML10F, F53LI13V, K20I, E35D, M36I, N37D, R41K, I62V, L63V, H69K, K70R, T74A, L89M, T91VA
 182090182090JN670599PINAM46I, I54V, L76VL89VK20P, E35N, M36I, N37D, R41K, R57K, Q61N, I62V, L63P, A71T, T74S, V82I, Q92KA
 184144184144JN670673PINAM46I, I50IL, I54AV, V82AL24I, L33F, Q58EL10I, T12N, I13V, G16GE, K20I, E35N, M36I, N37E, R41K, R57K, D60E, Q61N, L63T, I72T, L89MA
 199883199883JN671186PINAM46I, I54V, V82A, L90MN88DL10I, I13V, I15V, L19I, K20I, E35D, M36I, N37K, R41K, K45R, K55R, R57K, Q61N, L63P, C67F, A71T, I72EA
 203362203362JN671308PINA  L5LF, L10LP, I13V, G16E, E35D, M36I, R41K, L63V, H69K, L89M, T91VA
Kouri (2012)CU2041-09CU2041-09JQ585335PINAM46I, I54VL33I, G73SI13V, K14R, K20I, E35D, M36I, H69K, A71V, T74S, V75I, L89TA
 CU1315-09CU1315-09JQ585290PINAI54V, L90MF53L, L89VI13V, K14R, K20I, E35D, M36I, N37D, R41K, K45R, L63P, C67CY, H69K, A71IA
 CU75-11CU75-11JQ585492PINA  I13V, K14R, K20I, E35D, M36I, R41K, I64VA
 CU727-09CU727-09JQ585262PINAG48V, I54V, V82AF53LL10I, I13V, I15V, K20I, E35D, M36I, R41K, I64M, H69K, T74S, L89MA
 CU544-09CU544-09JQ585255PINAM46I, I47V, I54V, I84V, L90ML10F, V11VI, L33I, Q58E, G73S, T74P, N88G, L89VI13AV, K14R, K20IT, E35N, M36I, N37D, R41K, I62V, L63V, H69K, K70RA
 CU376-10CU376-10JQ585390PINAG48V, I54V, V82A L10V, T12I, I13V, K20I, E35D, M36I, N37DE, R41K, H69K, T74S, L89IA
 CU737-10CU737-10JQ585413PINAV32I, M46I, I47V, L90ML33F, F53L, L89VR8G, I13V, K20T, E35D, M36I, R41K, H69K, G73D, V82IA
 CU1908-09CU1908-09JQ585320PINAM46I, I54V, V82F, L90ML33F, T74PK20I, E35N, M36I, R41K, K43R, F53Y, R57K, I62V, L63P, H69K, I85V, R87RK, L89MA
 CU2007-09CU2007-09JQ585330PINAM46I, I54V, V82A, I84VL24I, L33FL10I, T12S, G16A, L19I, K20V, E35D, M36I, N37S, R41K, L63P, H69K, A71AV, T74S, L89M, I93LA
 CU599-11CU599-11JQ585511PINA  I13IV, K14R, I15V, K20R, E35D, M36I, R41K, R57K, L63APT, H69K, L89MA
Mollan (2012)MK105MK105w24 RTV, ATV24  I13V, E35D, M36I, R41K, R57K, H69K, L89MA
 MK186MK186w26 RTV, ATV25  I13V, E35N, M36I, R41K, R57K, H69K, L89MA
Reynolds (2012)J7227J0722-2JN652210LPV   I13V, K20I, A22AV, E35N, M36I, R41K, H69K, V77I, L89MA
Inzaule (2013)266266JQ914054NFV   I13V, K14R, G16E, E35D, M36I, N37E, P39T, R41K, H69K, L89MA
 289289JQ914063NFV   E35D, M36I, R41K, H69K, K70R, L89MA
 357357JQ914076LPV   I13V, K14R, E35D, M36I, N37D, R41K, R57K, D60E, H69K, L89MA
 410410JQ914067LPV   I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89MA
 475475JQ914089NFV   I13V, E35D, M36I, R41K, H69K, L89MA
 496496JQ914087NFV   I13V, E35D, M36I, N37D, R41K, R57K, L63A, H69K, L89MA
 433433JQ914055NFV   I13V, I15V, E35D, M36I, N37E, R41K, R57K, H69K, L89MA
Rawizza (2013)LM3929LM3929KF241482LPV M46I, I47V, I54V, V82AF53L, Q58EL10I, I13V, K14R, I15V, K20I, L33L_L, E35G, M36I, R41K, K55R, L63T, I64M, L89MA
Thiam (2013)2841-HALD2841-HALDJN673708LPV M46I, L76V, I84VV11I, L89VL10I, I13V, L19P, K20I, E35D, M36I, R41K, I62V, H69K, K70R, A71V, I72IR, P79AS, T91TS, Q92QKA
Van Zyl (2013)907685KC424227LPV130  E35ED, M36I, R41K, K45KR, R57RK, L63LIPT, H69K, L89M, I93ILA
 11791314KC423050LPV26  T12S, I13V, I15V, G16E, K20R, E35D, M36I, L63S, I64L, H69K, L89M, I93LA
 11961593KC423255LPV52 L33FI13V, K20R, M36I, R41K, D60E, Q61E, H69K, L89M, I93VA
 313697KC424232LPV26  G16E, K20KR, E35D, M36I, R41K, I62IV, L63V, I64L, H69K, I72V, L89MA
 7211935KC423520LPV52  T12P, I13V, I15V, G16E, E35D, M36I, R41RK, D60DE, L63S, H69K, K70R, L89IM, T91V, I93LA
Grossman (2014)20882088KC184354LPV52  L10V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93LA
 609609 LPV292M46I, I54V, V82A, L90MG73GS, N83D, L89VL10I, V11L, I13AV, K20R, A22V, E35N, M36I, N37D, R41K, K55R, R57RK, I62V, L63P, H69K, A71IV, T91S, I93LA
 14601460KC184186LPV52  I13IV, E35D, M36I, R41K, Q61E, L63P, H69K, V77I, L89M, I93LA
 13851385KC184183LPV52  L10V, E35D, M36I, R41K, H69K, L89MA
 20352035KC184345LPV52  L10V, E35D, M36I, R41N, L63P, H69K, K70R, L89M, I93ILA
 12211221KF134967LPV52  I13V, K14KR, I15V, E35D, M36I, N37D, R41K, Q61E, H69K, K70R, L89MA
 711711KF135126LPV52  I13IV, I15IV, G16GE, E35D, M36I, R41K, L63LP, H69K, I72V, L89M, I93LA
 5959KC213684NFV, LPV52 V11CFISW6RS, Q7D, R8T, L10LH, I13V, K20I, E35D, M36I, R41K, H69K, L89M, Q92L, I93L, T96HA
 288288KF135041NFV, LPV104  I13IV, E35D, M36I, R41K, L63LP, H69K, L89M, I93LA
 757757KF135136LPV52  K14R, E35D, M36I, N37D, R41K, H69K, L89MA
 11211121KC184166LPV52  K14R, E35D, M36I, N37D, R41K, H69K, L89MA
 792792KC184392LPV52  I13V, E35D, M36I, R41K, H69K, T74S, L89M, I93LA
 12201220KC184169LPV52  K14R, I15IM, K20KR, E35D, M36I, N37D, R41K, H69K, L89MA
 11181118KC184165LPV52  K14KR, I15IV, E35D, M36I, R41K, D60DE, Q61QE, H69K, L89M, I93ILA
 14391439KC184185NFV, LPV52  K20KR, M36I, R41K, Q61QE, H69K, L89M, I93LA
 18631863 LPV52  L10I, I13V, K14R, E35D, M36I, N37D, R41K, D60E, Q61E, L63V, H69K, L89M, I93LA
 948948 LPV52  I13V, E35D, M36I, R41K, L63T, H69K, V77I, L89M, I93LA
 11291129 LPV52  I13V, I15V, K20R, M36I, N37ND, R41KN, L63LP, H69K, L89M, I93LA