Reverse Transcriptase Inhibitors

HOME Genotype-Rx Genotype-Pheno Genotype-Clinical hivdb program

Reverse Transcriptase Inhibitors

Subtype	A
Gene	RT
Mutation	E40D
Rx	RTI-naive
IncludeMixtures	No

References	87
Patients	332
Isolates	336

Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr)	Patient	Isolate	Acc#	NRTIs	NNRTIs	NRTIDRMs	NNRTIDRMs	OtherMut	Subtype
Gao (1996)	92UG037	92UG037	U51190	None	None			E6S, K20R, V21I, V35T, T39A, E40D, K43R, K46R, V60I, K122E, D123S, I135T, S162A, K173S, Q174K, Q207E, R211K, V245E, D250E, E291D, V292I, I293V, P294T, E312D, V317A, G335D, T338I, M357K, G359S, T369A, A371V, I375V, A376V, T377M, A400T, T403M, E404D, W410*, E432D, V435A, D471E, Q480H, L491S, K512R, S519N, Q524K, K527E, E529D, A534S, A554S	A
Cornelissen (1997)	92RW016	92RW016	AF009409	None	None			V35T, E40D, K49R, H96X, G99X, K122E, D123S, I135T, K173S, D177E, V179I, Q207A, R211S, V245Q, K281R, E291D, I293V, P294T	A
	92UG031	92UG031	AF009398	None	None			E6D, V35T, E40D, V60I, V118I, K122E, D123N, I135T, E138A, I142V, K173S, Q174K, V179I, T200A, Q207G, R211S, F214L, V245E, D250E, S251H, T286A, E291D, V292I, I293V, P294A	A
Carr (1999)	SE9488	SE9488	AF071474	None	None			K11T, V35T, E40D, I47L, K49R, V60I, I135T, E169A, K173S, D177E, V179I, Q207A, R211S, V245Q, E248D, A288S, E291D, I293V, P294T, K311R, E312D, G335D, R356K, M357K, G359S, K366R, T369A, A371V, I375V, A376V, T377M, V381I, A400T, T403M, E404D, E432D, V435I, D471E, Q480H, H483Q, L491S, K512R, L517I, S519N, Q524K, K527Q, E529D, A534S, A554S	A
Becker-Pergola (2000)	225.745	BPG225.745	AF177544	None	None			K11Q, E29D, V35T, T39A, E40D, K49R, K122E, D123S, I135T, I142V, K173S, D177E, V179I, T200A, Q207A, R211S, V245Q, K281R, L283I, E291ED, I293V, P294T, E312D	A
	171.005	BPG171-005	AF177366	None	None			E6D, V35T, E40D, K43R, V118I, K122E, D123N, I135T, S162G, K173S, Q174K, D177E, V179I, Q207A, R211S, F214L, P243S, V245E, A272P, K281R, E291D, I293V, P294T, E312D	A
	190.574	BPG190-574	AF177368	None	None			V35T, E40D, V60I, K122E, D123S, I135T, A158S, T165I, K173LS, Q174K, D177E, V179I, T200A, Q207A, R211S, V245E, D250E, E291D, I293V, E297K, E312D	A
	225.706	BPG225-706	AF177371	None	None			E6DN, V35T, E40D, V60I, K122E, D123N, I135T, K173A, Q174K, D177E, I178IL, V179I, I202V, Q207K, R211S, F214L, V245E, D250E, V261I, T286A, E291D, V292VI, I293V, P294T, E312D	A
Vergne (2000)	LVMP582	LVMP582	AJ286930	None	None			K11T, K20R, E29D, V35T, E40D, K49R, K122E, D123N, I135T, I142V, K173S, D177E, V179I, Q207A, R211S, V245Q, E248D, E291D, I293V, P294T, E312D, G335D, I341V, M357K, G359S, T369A, A371V, I375V, A376V, T377M, A400T, T403M, E404D	A
	LVMP1270	LVMP1270	AJ287032	None	None			K11T, V35T, T39N, E40D, K122E, D123S, A158S, K173T, D177E, T200A, E203D, Q207A, V245Q, L260I, A272P, T286A, E291D, I293V, P294T, E312D, I326V, G335E, M357K, R358G, G359S, E370A, A371V, I375V, T377I, K390R, T403M	A
Balotta (2001)	CB-2045	CB-2045	AF295285	None	None			V21I, V35T, T39A, E40D, V60I, K122E, D123S, I135T, K173L, Q174K, D177G, V179I, T200I, Q207A, R211S, V245Q, E248D, D250E, K281R, T286A, E291D, V292I, I293V, P294T, E297K	A
	CB-2673	CB-2673	AF295286	None	None			V21I, V35T, T39A, E40D, V60I, K122E, D123S, I135T, K173L, Q174K, D177E, V179I, T200I, Q207A, R211S, V245Q, E248D, D250E, K281R, T286A, E291D, V292I, I293V, P294T, E297K	A
Carr (2001)	CM53392	CM53392	AF377957	None	None			K11S, V35T, T39N, E40D, V60I, K104R, K122E, D123S, I135T, T165I, K173A, D177E, T200A, Q207K, R211K, V245Q, K281R, E291D, V292I, I293V, P294T, E297K, S322G, D324E, Q334D, G335D, R356K, M357R, G359S, K366R, A371V, K374R, I375V, A376T, K390R, K395R, A400T, T403M, V435E, D471E, Q480H, H483Y, G490E, L491T, E492K, K512R, L517V, S519N, Q524K, K527E, A534S, A554S	A
Yahi (2001)	NY_M23	M23	AY010450	None	None			V35IT, T39N, E40D, D121DY, K122E, I135T, S162C, K173T, Q174K, Q207A, R211S	A
Dowling (2002)	KNH1207	KNH1207	AF457068	None	None			V35T, E40D, I47L, K49R, K122E, D123G, K173S, Q174K, D177E, V179I, Q207A, R211S, V245Q, K281R, E291D, I293V, L295M, E312D, G335D, R356K, M357R, G359S, A371V, I375V, A376V, T403M, E404D, E432D, T459I, D471E, Q480H, L491S, K512R, S519N, Q520L, K527G, E529D, A534S, A554S	A
	KNH1199	KNH1199	AF457067	None	None			V35T, E40D, K49R, V60I, F87L, A98S, K122E, D123N, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, D250E, K277R, T286A, E291D, I293V, P294T, K311R, E312D, G335D, M357K, R358K, G359S, K366R, T369A, A371V, I375V, A376V, T377M, K390R, A400T, T403M, E404D, E432D, V435A, V466I, D471E, K476R, Q480H, H483Y, L491S, Q507H, K512R, E514D, S519N, Q524K, K527G, E529D, A534S, A554S	A
Hanna (2003)	HG100	HG100	AY049532	None	None			T39N, E40D, K122E, D123S, I135T, I142V, K173S, Q174K, D177E, V179I, T200A, Q207A, R211RS, V245Q	A
Jorgensen (2003)	JLB_Pat81	HIM419507	AJ419507	None	None			K11KN, V35T, T39M, E40D, I50V, V60I, K122E, D123S, I135T, I142V, S162A, T165I, K173S, Q174K, D177E, V179I, T200A, Q207A, R211K, D250E, Q278H, T286A, E291ED, I293V, P294A, E312D, V317A, D320DE	A
Maljkovic (2003)	MI_Pat9	00SE19902	AY165240	None	None			K11T, V21I, V35T, T39N, E40D, V60I, D121H, K122E, D123S, R172RK, K173AT, Q174K, D177E, Q207A, R211S, V245Q, I257L, A272P, K275KQ, K277R, T286A, E291D, I293V, P294T, E312D, Q334E, G335D	A
Shafer (2003)	A384_2774	2774a	EF548532	None	None			E40D, V60I, K64R, D76DN, D110DN, V111VL, D113DN, D121H, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, T200TA, Q207A, R211S, V245M	A
Arroyo (2004)	01TZA359	01TZA359	AY253319	None	None			E6T, T27S, V35T, E40D, K49R, E53K, V60I, K122E, D123G, I135T, E169D, K173A, Q174K, D177E, T200A, Q207E, F214L, D250E, G262E, T286A, E291D, I293V, E302K, E312D, G335D, M357K, G359S, K366R, T369A, A371V, I375V, A376V, T377M, A400T, T403M, E404D, E432D, G453E, V466I, D471E, Q480H, S519N, K527N, E529K, A534S, A554S	A
Eshleman (2004)	SE599	SE599p	AY435394	None	None			V35T, E40D, I50V, K122E, D123S, I135T, I142T, K173S, D177E, V179I, Q207A, R211S, F214L, V245Q, A272P, E291D, I293V, P294T, L310I, E312D, D324E	A
Konings (2004)	KFA_01CMNYU5203	01U5203	AY534744	None	None			V35T, E40D, S48T, V60I, V118I, K122E, D123N, K173S, I202V, Q207A, R211S, F214L, V245Q, E248D, D250E, S251N, Y271F, A272P, V276I, T286A, E291D, V292I, I293V, P294T, L295M, E297Q, E312D, I326V, G335D, R356K, M357R, G359S, T369V, A371V, I375V, A376S, T386I, K390R, A400L, E432D, V435L, L452S, R461K, V467I, S468T, D471E, Q480H, H483Y, L491S, K512S, L517I, S519N, Q524K, K527E, K530R, A534S	A
Servais (2004)	SJ_Pat5	SJKLM030	AJ413009	None	None			I37X, E40D, K49KR, K122E, D123N, K173S, Q174K, D177E, V179I, Q207A, R211S, F214L, K238KI	A
	SJ_Pat10	SJKLM017	AJ412997	None	None			I37X, E40D, K49R, I50V, V60I, D121H, K122E, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, V245K	A
	SJ_Pat11	SJKLM050	AJ413023	None	None			I37X, E40D, K122E, D123N, K173S, Q174K, D177E, V179I, Q207A, R211S, F214L, V245Q	A
	SJ_Pat12	SJKLM034	AJ413011	None	None			I37X, E40D, K49R, V60I, D121Y, K122E, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, I244V	A
	SJ_Pat14	SJKLM051	AJ413024	None	None			I37X, E40D, S48T, K49R, K122E, D123N, E138G, K173S, V179I, Q207A, V245Q	A
	SJ_Pat15	SJKLM019	AJ412999	None	None			I37X, E40D, S48T, K49R, V60I, K122E, D123S, I135T, T165I, K173S, Q174K, V179I, D186DY, T200A, Q207A, R211S, V245Q	A
	SJ_Pat21	SJKLM004	AJ412985	None	None			I37X, E40D, K49R, Q145C, K173S, D177E, V179I, T200A, I202V, Q207A, R211S, V245Q	A
	SJ_Pat22	SJKLM020	AJ413000	None	None			I37X, E40D, V60I, D121H, K122E, D123G, T165I, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245Q	A
	SJ_Pat26	SJKLM023	AJ413002	None	None			I37X, E40D, S48ST, K49KR, K122E, D123N, I142V, K173S, D177E, I178IL, V179I, Q207A, R211S, V245P, L246V	A
	SJ_Pat29	SJKLM009	AJ412989	None	None			I37X, T39M, E40D, K122E, D123N, I135T, S162C, K173S, D177E, V179I, T200A, Q207A, R211S, V245Q	A
	SJ_Pat32	SJKLM026	AJ413005	None	None			I37X, E40D, K49R, K122E, D123N, K173S, Q207A, R211S	A
	SJ_Pat41	SJKLM047	AJ413020	None	None			I37X, E40D, K49R, K122E, I135T, G141GE, S162H, K173A, Q174K, D177E, V179I, Q207A, R211S, V245E	A
	SJ_Pat42	SJKLM048	AJ413021	None	None			I37X, T39A, E40D, V60I, D121Y, K122E, D123G, I135T, I142V, K173X, Q174K, D177E, V179I, D186N, D192N, Q207A, R211S, M230I, V245I	A
Snoeck (2004)	BE48	BE48	AY901303	None	None			K11T, V35T, E40D, K49R, N57NI, K122E, D123NS, I135IV, E169T, K173S, D177E, V179I, T200A, Q207A, R211S, F214L	A
	BE58	BE58	AY901310	None	None			V35T, T39A, E40D, V60I, K104KR, K122E, D123S, I135T, I142V, K173LS, Q174K, D177E, V179I, T200A, Q207A, R211S, V245Q, D250E, K281KR, T286A, E291D, I293V, P294T, L295LM, K311KR, E312D	A
	BE65	BE65	AY901498	None	None			K22R, E28EA, V35T, T39E, E40D, K49KR, I50IV, V118I, K122E, D123NS, I135T, K173L, Q174K, D177E, Q207A, R211S, F214L, V245X, E248ED, D250DE, S251SN, K281R, T286A, E291D, V292I, I293V, P294T, E312DN, D320DE, D324E	A
Yang (2004)	98KE178	98KE178	AY492761	None	None			K20R, K32R, V35T, E40D, K49R, V60I, K122E, D123S, I135T, T165I, K173S, Q174K, D177E, V179I, Q207A, R211S, V245Q, D250E	A
	99KE579	99KE579	AY492780	None	None			V35T, E40D, V60I, D121H, K122E, D123E, I135T, K173S, Q174K, D177E, V179I, Q207A, R211S, V245K, D250E	A
Brown (2005)	BB_92UG_029	92UG_029	AY713407	None	None			E6D, V35T, E40D, K49R, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, Q197K, T200A, Q207A, R211S, V245E, E248A, D250E, K275Q, T286A, E291D, V292I, I293V, P294T, E312D, G335D, M357K, G359S, T369A, A371V, I375V, A376T, T377M, A400T, T403R, E404D, E432D, L452Q, T470N, D471E, Q480H, H483Y, L491S, K512R, E516G, Q524K, K527E, E529D, A534S, A554S	A
Ciccozzi (2005)	MC_AY611655	A44	AY611655	None	None			V35T, E40D, V60I, D121E, K122E, D123N, I135T, K173S, Q174K, D177E, I178M, V179I, Q207A, R211S, F214L, V245I, D250E, K281R, T286A, E291D, V292I, I293V, P294T, E312N, V317A, A327V	A
	MC_AY611703	A25	AY611703	None	None			V21I, V35T, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245K, D250E, T286A, E291D, V292I, I293V, E312D, V317A	A
	MC_AY611714	A40	AY611714	None	None			V35T, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, Q207A, R211S, V245I, D250E, T286A, E291D, V292I, I293V, P294T, E312D, V317A	A
Grossman (2005)	20781	20781RT271		None	None			T39K, E40D, K122E, D123S, A158S, K173L, Q174K, D177E, K201KQ, Q207A, R211S, V245M	A
K'Aluoch (2005)	OK_TC023504	TC023504	DQ079827	None	None			V35T, T39A, E40D, V60I, D121H, K122E, I142V, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, D250E, E291D, I293V, P294T, K311R	A
Non-B Workgroup (2005)	IL353	IL353	AY901361	None	None			E40D, V60I, K102Q, K104R, K122E, D123S, K166R, F171FL, K173A, Q174K, D177E, V179I, Q197L, T200A, Q207A, R211S, V245N, L246C, P247R	A
Paraskevis (2005)	GRSPR57	GRSPR57	AY940276	None	None			E40D, V60I, D123E, I135T, K173S, Q174R, D177E, I178L, V179I, Q207A, R211S	A
	GRSPR114	GRSPR114	AY940275	None	None		Y181C	E40D, K49R, V60I, K122E, D123N, I135T, K173L, Q174K, V179I, T200A, Q207T, R211S	A
	GRSPR46	GRSPR46	AY940272	None	None			E40D, K49R, V60I, L100P, K122E, D123N, I135T, K173S, Q174K, D177E, T200A, Q207A, R211S, V245K	A
Vazquez de Parga (2005)	RUSO02	RUSO02	EU345799	None	None			V35T, T39M, E40D, V60I, K122E, D123S, I135T, K173L, Q174K, Q207A, R211S, V245LQ, E248D, A272P, T286A, E291D, V292I, I293V, P294T, D324E	A
Eshleman (2006)	SE599	599-pre	DQ230330	None	None			V35T, E40D, I50V, K122E, D123S, I135T, I142T, K173S, D177E, V179I, Q207A, R211S, F214L, V245Q, A272P, E291D, I293V, P294T, L310I, E312D, D324E	A
Lindstrom (2006)	SIIDC0204	SIIDC0204		None	None			V35T, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, Q207A, R211S, V245R, D250E	A
Marechal (2006)	JF_051	JF_051	DQ443571	None	None			E6R, V35T, T39N, E40D, K122E, D123E, S162D, K173S, D177E, Q207E, V245Q, L246V, E248N, S251G, N255H	A
	JF_079	JF_079	DQ443585	None	None			V35IT, T39N, E40D, D123E, I142V, A158S, K173A, Q174K, D177E, V179I, Q207D, R211K	A
	JF_124	JF_124	DQ443611	None	None			E6K, K11A, D17E, V35T, T39N, E40D, K122E, D123N, K173S, D177E, Q207S, R211K, V245Q, E248D	A
Njai (2006)	MP582	97CM.582	AM279370	None	None			K11T, K20R, E29D, V35T, E40D, K49R, K122E, D123N, I135T, I142V, K173S, D177E, V179I, Q207A, R211S, V245Q, E248D, E291D, I293V, P294T, E312D, G335D, I341V, M357K, G359S, T369A, A371V, I375V, A376V, T377M, A400T, T403M, E404D, E432D, V435L, R463K, D471E, Q480H, H483L, L491S, Q507H, K512R, E514D, S519N, Q524K, K527G, E529D, A534S, A554S	A
Saad (2006)	MDS_01UAPol304	01UAPol304	DQ055259	None	None			K11T, V35T, T39K, E40D, D123S, K173L, Q174K, D177E, Q207A, R211S	A
Vessiere (2006)	AV_M4556N	AV_M4556N	DQ297332	None	None			V35T, E40D, K49R, K122Q, I135T, K173AS, Q174K, D177E, V179I, T200A, Q207A, R211T, V245Q	A
	AV_M4716N	AV_M4716N	DQ297338	None	None			K11A, V35T, T39N, E40D, V60I, D121Y, K122E, D123G, I135T, E169D, K173A, Q174K, D177E, G196E, Q207A, R211S, V245Q, E248N	A
Vidal (2006)	NV_KS009	02.KS009	AM041007	None	None			V35T, E40D, K49R, K122E, D123N, I142V, K173A, D177E, V179I, T200A, Q207A, R211S, V245Q, A272S, T286A, E291D, V292I, I293V, P294T, E312N, G335D, M357R, R358G, G359S, E370A, A371V, I375V, A376V, T403M, E432D, V435I	A
Zarandia (2006)	MZ_03GEMZ007	03GEMZ007	DQ205266	None	None			K11T, V35T, E36D, T39N, E40D, K122E, D123S, K173L, Q174K, D177E, Q207A, R211S	A
	99GEMZ011	99GEMZ011	DQ205257	None	None			K11T, V35T, E36D, T39N, E40D, K104R, K122E, D123S, I135T, S162C, K173S, Q174K, D177E, Q207A, L210M, R211S	A
	03GEMZ037	03GEMZ037	DQ207944	None	None			K11T, V35T, E36D, T39N, E40D, K104R, K122E, D123S, I135T, S162C, K173S, Q174K, D177E, Q207A, L210M, R211S, V245M, P247L, E248D, A272P, T286A, E291D, V292I, I293V, P294T, K311R, I326V, R356K, M357K, R358G, G359S, E370A, A371V, I375V, K390R, T403M, L452I, S468P, D471E, Q480H, L491S, I506V, K512R, L517I, S519N, Q520K, Q524K, K527E, K530R, A534S, A554N, K558R	A
Baker (2007)	A1021	MBA1021-170805	EF186204	None	None			L26W, V35T, E40D, V60I, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245M, D250E, T286A, E291ED, I293V, P294PT, E312N	A
	A1037	MBA1037-060905	EF186211	None	None			V35T, E40D, K49R, V60I, K122E, D123S, I135T, K173A, Q174K, D177E, I178IV, V179I, G196E, Q207A, R211RS, V245T, D250E, K275R, V276I, T286A, E291D, I293V, P294T, E297K, E312D	A
Brumme (2007)	1660	PRRT_1660	EF368970	None	None			V35T, E40D, V60I, D121H, K122E, I135T, K173S, Q174K, D177E, V179I, I202V, E203ED, Q207A, L210LM, R211S, V245EK, D250E, S251SN, T286A, E291D, V292I, I293V, E312D, A327AV, Q334P, G335D, M357R, G359S, T369A, A371AV, I375V, A376AV, K390R	A
Church (2007)	031-106897U	031	EF611996	None	None			E6D, V35T, E40D, K49R, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, I178V, V179I, Q207D, R211RS, V245K, D250E, V261I, K275Q, K281R, T286A, E291D, V292I, I293V, E312D, V317VA	A
	034-109734M	034	EF611999	None	None			E6D, V35T, E40D, K49KR, V60I, K122E, D123DG, I135T, S162A, K173S, Q174K, D177E, V179I, T200TA, Q207D, V245E, D250E, S251N, T286A, E291D, V292I, I293V, P294T, E312D, V317VA	A
	046-110300R	046	EF612003	None	None			K20R, V35T, E40D, K49R, K122E, D123N, I135T, K173S, Q174QK, V179I, Q207A, R211S, V245Q, E291D, I293V, P294T, L295M, E312D	A
	057-110308G	057	EF612007	None	None			E6D, K20R, V35T, T39TA, E40D, V60I, V106VI, D123E, I135T, K173A, Q174K, D177DE, I178IV, V179I, Q207A, F214L, V245Q, D250E, E291D, V292I, I293V, P294T, E312N	A
	199-114660F	199	EF612015	None	None			E6N, V35T, E40D, V60I, K122E, I135T, K173A, Q174K, D177E, V179I, Q207A, R211S, V245EKQ, E248ED, D250E, S251HN, T286A, E291D, V292I, I293V, P294T, E312D, V317A	A
	408-125049Q	408	EF612022	None	None			K11T, V35T, E40D, K43R, K122E, D123N, K173A, D177E, V179I, Q207A, R211S, F214L, V245K, D250E, T286A, E291D, I293V, P294T, E312D, V317A	A
	476-126649x	476	EF612039	None	None			E6N, V35T, E40D, K43R, K122X, D123E, K173ALSV, Q174K, D177E, V179I, Q207A, R211S, V245Q, E291D, I293V, P294T, E312D, A327V	A
	503-127844l	503	EF612048	None	None			V8I, V35T, E40D, K49R, K122E, D123S, I135T, T165I, K173S, D177E, E194ED, T200A, Q207AT, R211S, V245Q, E291ED, I293V, P294T, E312D, S322SA, A327AV	A
	514-128712J	514	EF612052	None	None			E6D, V35T, E40D, K49R, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, Q207A, R211RS, V245Q, D250E, T286A, E291D, I293V, P294T, E312D, P321S	A
	582-130283Q	582	EF612073	None	None			I5IV, E6ED, K11KN, V35T, E40D, K43R, K49R, V60I, D121H, K122E, I135T, I142V, K173AS, Q174K, D177E, V179I, T200A, Q207A, R211S, V245E, D250E, K277KR, T286A, E291D, V292I, I293V, P294T, E312D	A
	584-131489e	584	EF612075	None	None			V35T, E40D, V60I, D121Y, K122E, K173S, Q174K, D177E, I178M, V179I, T200A, Q207A, R211S, D250E, K281R, T286A, E291D, V292I, I293V, P294T, E312D, V317A	A
	662-135975N	662	EF612099	None	None			K11T, V35T, E40D, K43KR, K122KE, D123DGNS, K173L, Q174K, D177E, I178V, V179I, T200A, Q207A, R211S, F214L, V245Q, D250S, A272P, K275Q, K277R, T286A, E291D, V292I, I293V, P294T, E312D, S322A	A
	679-137708Q	679	EF612104	None	None			E6K, K11T, V35T, T39TAIV, E40D, K122E, D123N, T139TA, K173S, D177E, V179I, T200A, Q207A, F214L, V245Q, A272T, K277KR, T286A, E291D, I293V, P294T, E312D, G333GE	A
	690-138008N	690	EF612109	None	None			E6N, K11KR, V35T, T39TA, E40D, K49KR, V60VI, K64KR, K122E, D123NS, I135T, K173L, Q174K, D177E, V179I, G196E, Q207A, R211S, V245X, D250DE, A272P, K275Q, K277R, T286A, E291D, V292VI, I293V, P294T, E312D	A
	702-136536A	702	EF612115	None	None			E6D, K20R, V35T, E40D, V60I, K122E, D123G, I135T, K173S, Q174T, D177E, T200A, I202V, Q207K, R211S, F214L, D250E, T286A, E291D, V292I, I293V, E312N	A
	792-142856n	792	EF612147	None	None			K11T, V21I, V35T, T39A, E40D, K122E, D123N, K173L, Q174K, D177E, V179I, I202V, Q207A, R211S, V245Q, E248D, T286A, E291D, I293V, P294T, L295M, E312D	A
	820-144896A	820	EF612159	None	None			K11RT, E28G, V35I, E40D, K49R, K122E, D123S, I135T, S162SN, K173S, Q174K, D177E, V179I, I202IV, Q207A, R211S, F214L, V245Q, E248D, A272T, T286A, E291D, I293V, E312D	A
	839-146276F	839	EF612164	None	None			E6D, K11Q, V35T, E40D, K49R, V60I, D123N, T165I, K173T, D177E, T200A, Q207E, V245Q, D250E, V292VI, I293V, P294T	A
	866-147223K	866	EF612174	None	None			K20R, V35T, E40D, V60I, K102Q, K122E, D123NS, I142IV, K173AS, Q174K, D177E, T200A, I202V, Q207A, R211S, P243PS, V245K, D250E, S251SN, A272P, K281R, T286A, E291D, V292I, I293V, P294T, E312D	A
	876-147573X	876	EF612178	None	None			V35T, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, T200L, Q207A, R211S, V245T, D250E, T286A, E291D, V292I, I293V, P294T, E312D, V317A	A
Galluzzo (2007)	24260	RW_24260	JQ220022	None	None			E40D, K49R, V60I, K122E, D123S, I135IT, I142V, K173A, D177E, V179I, Q197QK, T200A, Q207A, V245K	A
	24130	RW_24130	JQ220056	None	None			E40D, K49R, K122E, D123S, K173S, D177E, V179I, I195IT, Q207A, R211S, V245Q	A
	M22310	UG_M22310	JQ220072	None	None			E40D, V60I, D121Y, K122E, K173A, Q174K, D177E, V179I, T200R, Q207A, R211S, K238R, V245Q	A
	M21200	UG_M21200	JQ220136	None	None			E40D, K43R, K122E, D123S, K173L, Q174K, D177E, I178V, V179I, T200A, I202IV, Q207A, R211S, F214L, K238KI, V245Q	A
	M21270	UG_M21270	JQ220150	None	None			E40D, K49R, V60I, K122E, D123GS, Q174K, D177E, I178IM, Q207A, V245K	A
Gatanaga (2007)	C04-51110143-1	C04-51110143-1	AB640243	None	None			I31T, V35T, E40D, V60I, R83S, D121H, K122E, I135T, I142V, K173S, Q174K, D177E, V179I, Q207A, R211N	A
Han (2007)	LN14	00CNLN14	EF122512	None	None		K103N	K11N, V35T, E40D, K49R, V60I, K122E, D123S, K173S, D177E, V179I, Q207A, R211S, V245T	A
	LN13	00CNLN13	EF122563	None	None			V35T, E40D, K49R, V60I, K122E, D123S, K173S, D177E, I178M, V179I, Q207A, R211S, V245T	A
Holguin (2007)	LP582659	LP582659	DQ009048	None	None			K11T, T27S, V35T, T39N, E40D, K49R, I50IV, D123N, K173AS, Q174K, D177E, I178IV, V179VI, T200A, Q207A, R211S, V245Q, K281R, T286A, E291D, V292T, I293V, P294A, E297R, A304E	A
Li (2007)	PS1044	1044_d0	DQ676872	None	None			E28A, V35T, E40D, V60I, K122E, D123N, I135T, F171Y, K173A, Q174K, V179I, T200A, Q207A, R211S, V245N, D250E, T286A, E291D, I293V, P294T, D324E, G335D, M357K, G359S, H361HY, K366R, T369A, A371V, I375V, A376V, T377M, E399D, A400T, T403M, E404D, E432D, V467I, D471E, Q480H, H483Y, L491S, K512R, S519N, Q524K, K527G, E529D, A534S, A554S, K558R	A
		1044_d177	DQ676873	None	None			E28A, V35T, E40D, V60I, K122E, D123N, I135T, F171Y, K173A, Q174K, V179I, T200A, Q207A, R211S, V245N, D250E, V276VI, T286A, E291D, I293V, P294T, D324E, G335D, M357K, G359S, K366R, T369A, A371V, I375V, A376V, T377M, E399D, A400T, T403M, E404D, E432D, V467I, D471E, Q480H, H483Y, L491S, K512R, S519N, Q524K, K527G, E529D, A534S, A554S, K558R	A
Lwembe (2007)	NYU62	62MFEB01		None	None			V35T, E40D, K49R, V60I, V106I, K122E, D123S, K173S, Q174K, D177E, I178M, V179I, T200A, Q207A, R211S	A
		62MSEP02		None	None		G190A	V35T, E40D, V60I, K101Q, V106I, K122E, D123G, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S	A
McNulty (2007)	Cam32	Cam32PL	DQ869193	None	None			E6N, V8I, K11T, V35T, E40D, V118I, D121H, K122E, D123S, I142V, F171Y, K173S, D177E, I202V, Q207A, R211S, F214L	A
Razafindratsimandresy (2007)	11	11HIV-SEY	EF143545	None	None			K11R, V21I, V35T, T39A, E40D, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200A, I202V, Q207A, R211RS, V245Q, E248D	A
Sanchez Onoro (2007)	582659	582659		None	None			K11T, T27S, V35T, T39N, E40D, K49R, I50IV, D123N, K173AS, Q174K, D177E, I178IV, V179VI, T200A, Q207A, R211S, V245Q, K281R, T286A, E291D, V292T, I293V, P294A, E297R, A304E	A
Shang (2007)	CNLN13	CNLN13	AY548274	None	None	V75L		V35T, E40D, E44G, K49R, V60I, I63M, K64R, D121H, K122E, D123S, E138D, Q145H, N147H, K173S, D177E, I178M, V179I, Q197P	A
Vicenti (2007)	5513	74574R	EF376882	None	None			I5V, K11A, V35T, T39N, E40D, K49R, D121Y, K122E, E169D, K173T, Q174K, D177E, G196E, Q207A, R211S	A
Vidal (2007)	U1808	02BU.U1808	AM260224	None	None			K11T, V35T, E40D, K49R, K122E, D123N, A158AS, K173S, Q174K, D177E, V179I, Q207D, V245K, D250E, A272P, K281R, T286A, E291D, P294T, G335D, M357Q, G359A, T369A, A371V, A376T, T377R, A400T, T403M, E404D	A
	U2226	02BU.U2226	AM260240	None	None			I5V, K11T, V35T, E40D, S48T, K104R, V118I, K122E, D123S, S163T, T165I, K173L, Q174K, D177E, V179I, G196S, T200I, Q207A, R211N, F214L, V245K, E248D, A272P, V276I, T286A, E291D, I293V, P294T, E312D, G335D, R356K, M357K, R358K, G359S, A360T, A371V, I375V, A376V, T377M, A400T, T403M, E404N, K431T, E432D, V435A	A
	U3126	02BU.U3126	AM260255	None	None			V35T, E40D, V60I, K122E, D123G, I135T, K173L, Q174K, D177E, V179I, T200A, Q207E, R211K, V245Q, D250E, A272P, T286A, E291D, V292I, I293V, P294T, G335D, M357K, G359S, K366R, T369A, A371V, I375V, A376V, K388R, A400T, T403M, E404D	A
von Wyl (2007)	56	10371527	EF450011	None	None			V35T, E40D, V60I, K64KR, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, Q207E, R211S	A
Chang (2008)	TW3632a	TW3632a		None	None			V35T, E40D, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179VI, T200TI, I202MV, Q207K, R211S, V245IM	A
Land (2008)	ML1990	ML1990	EU110092	None	None			V35T, E40D, K49R, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245Q, D250E, E291D, V292I, I293V, P294T, E312D, I326M, G335D, M357K, G359S, K366R, T369A, A371V, I375V, A376V, T377M, A400T, E404D, E432D, V435A, D471E, Q480H, L491S, S519N, Q524K, K527E, E529D, A534S, A554K	A
	ML2014	ML2014	EU110094	None	None			V35T, E40D, K49R, V60I, D121H, K122E, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245Q, K249R, D250E, I257IV, T286A, E291ED, I293IV, P294T, E312DH, G335D, M357K, G359S, A360AT, K366R, A371V, I375V, A376V, T377M, A400T, T403M, E404D, E432D, V435E, F440Y, S468T, D471E, T477A, Q480H, L491S, K512R, S519N, Q524K, K527G, E529D, A534S, A554S, V559I	A
Ndembi (2008)	IAEM031	IAEM031	EU306763	None	None			V21I, V35T, T39A, E40D, D123S, K173A, Q174K, D177E, V179I, T200A, Q207A, R211K	A
	IAEM033	IAEM033	EU306764	None	None			V35T, E40D, K49R, V60I, K122E, D123S, I135T, F171Y, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S	A
	IAEM039	IAEM039	EU306769	None	None			K11T, V35T, E36D, E40D, K49R, V60I, K122E, D123N, I135T, E138G, T165I, K173T, Q174K, D177E, I178V, V179I, G196E, T200A, I202V, Q207A, R211S, F214L	A
	IAEM054	IAEM054	EU306778	None	None			V35T, E40D, I135T, K173S, Q174K, D177E, V179I, Q182R, T200E, Q207A, R211S	A
	IAEM060	IAEM060	EU306781	None	None			I5V, E6D, V35T, E40D, V60I, K122E, D123S, I135T, G141R, I142V, K173L, Q174K, D177E, V179T, I202V, Q207G, R211S, F214L	A
	IAEM065	IAEM065	EU306784	None	None			V35T, E40D, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, T200A, Q207E, R211S	A
Nyombi (2008)	TBK024	TBK024	EU251730	None	None			V35T, E40D, K49R, V60I, K122E, D123G, I135T, E169D, K173S, Q174K, D177E, I178M, V179I, G196E, I202V, Q207A, R211K, V245I, D250E, A272P, K277R, L283I, T286A, E291D, I293V, P294T, E312D, V317A, G335D, N348T, M357K, G359S	A
	TBK056	TBK056	EU251750	None	None			V35T, E40D, K49R, V60I, K122E, D123S, I135T, K173V, Q174K, D177E, V179I, T200A, Q207A, R211N, D250E, S251I, K281R, T286A, E291D, I293V, P294T, E297K, E312D, G335D, M357K, G359S, K366R, T369A, A371V, I375V, A376V, T377L	A
	TMS001	TMS001	EU251782	None	None			K11R, V35T, E40D, K49R, V60I, K122E, D123N, I135T, T139S, K173S, Q174K, N175H, D177E, V179I, T200A, Q207A, R211S, F214L, V245I, D250E, K281R, T286A, E291D, V292I, I293V, P294T, E297K, A327V, G335D, M357K, G359S, T369A, A371V, I375T, A376V, T377M	A
	TMS002	TMS002	EU251783	None	None			K11Q, V35T, T39M, E40D, I50V, V60I, V118I, D121H, K122E, D123S, I135T, K173L, Q174K, D177E, T200A, Q207A, F214L, I244V, A272P, K277R, T286A, I293V, P294T, G335D, M357K, G359S, T369A	A
	TMS134	TMS134	EU251832	None	None			K11T, K20R, V21I, V35T, T39K, E40D, D121H, K122E, D123S, I142V, T165I, K173S, D177E, V179I, Q207A, R211S, T286A, E291D, V292I, I293V, P294T, E312D, P321Q, D324E, G335D, M357K, R358K, G359S	A
	TMS137	TMS137	EU251833	None	None			K11T, K20R, V21I, V35T, T39K, E40D, D121H, K122E, D123S, I142V, T165I, K173S, D177E, V179I, Q207A, R211S, T286A, E291D, V292I, I293V, P294T, E312D, P321Q, D324E, G335D, M357K, R358K, G359S, K366R, T369V, A371V, I375V, A376V, T377M	A
	TMS142	TMS142	EU251835	None	None			V35T, T39A, E40D, K122E, D123N, I142V, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, K238R, E248D, A272P, K281R, E291D, I293V, P294T, E312D, G335D, R356K, M357K, G359S, A360AT, K366R, T369V, A371V, I375V, A376V	A
Somi (2008)	BG-05-746	BG-05-746	JQ616952	None	None			V35T, E40D, K43R, K49R, V60I, K122E, D123N, I135T, K173L, Q174K, V179I, T200A, Q207A, R211S	A
	OY-05-288	OY-05-288	JQ616969	None	None			E28A, V35A, E40D, V60I, D121H, K122E, I135T, K173S, Q174K, D177E, I178L, V179I, V189I, Q207A, V245T, D250E	A
	OY-05-271	OY-05-271	JQ616976	None	None			V35T, E40D, K49R, K122E, D123S, I135T, S162C, T165I, K173A, Q174K, D177EG, Q207A, R211S, V245E, D250E	A
Aghokeng (2009)	CYR028	CYR028	GU191583	None	None			V35T, E40D, K49R, K122E, D123N, I135T, K173S, V179I, E204EQ, Q207A, R211N, V245M, V276I, E291D, I293V, P294T, E312D, G335D, M357K, G359S, K366R, T369A, K374R, I375V, A376V, A400T, T403M, E404D, V417I	A
	AV_0274	AV_0274	GU191655	None	None			K20R, V35T, T39K, E40D, E53D, V60I, V106VI, T107S, V111VI, K122E, D123EQ, S162CF, D177E, I178L, E194EK, Q207E, R211RK, F214L, L228LH, E233EK, V245E, D250E, A272P, K277R, T286A, V292I, E297R	A
	HG_0943	HG_0943	GU191658	None	None			E6D, K11LS, V35T, T39N, E40D, K43KR, D123DN, K166R, K173S, D177E, Q197K, T200A, Q207D, V245Q, D250EK, G262GE, V276VI, K277KR, Q278QP, T286TA, V292I, I293V, E297Q, E312NT, I326V, G335D	A
	HG_0130	HG_0130	GU191659	None	None			K11T, V35T, T39K, E40D, K49R, D121H, K122E, D123G, K173L, D177E, G196K, Q207A, R211K, V245Q, T286A, E291D, V292I, I293V, E312D, G335D	A
Bartolo (2009)	CSE135	01AOCSE135	EU068355	None	None			K11T, V35T, T39K, E40D, K122E, D123G, P150R, S162A, K173S, D177E, T200A, Q207N, V245Q, E248N, A272P, K281R, T286A, I293V	A
Cuevas (2009)	X2711_1	X2711_1	GU326181	None	None			K20R, V35T, E40D, K49R, V60I, K122E, D123N, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, V245M, D250E, I274V, T286A, E291D, V292I, I293V, P294I, E312N, G335D, M357K, G359S	A
Eshleman (2009)	D27089W2	07-156927	FJ389066	None	None			E6D, V35T, T39A, E40D, V60I, V118VA, K122E, D123S, I135T, I142V, K173S, Q174K, D177E, V179I, Q207N, V245K, D250E, T286A, E291D, V292I, I293V, P294T	A
	G08798W3	07-156948	FJ389074	None	None			V35T, E40D, K122E, D123N, I135T, K173L, Q174K, Q207E, R211S, F214L, V245E, D250E, V261I, K275R, V276I, T286A, E291D, I293V, P294T	A
	K24111W1	07-156976	FJ389083	None	None			V35T, E40D, V60I, K122E, I135T, K173S, Q174K, D177E, V179I, Q207S, R211S, V245E, D250E, L282LF, L283I, I293V, P294A	A
	B06769W2	07-156979	FJ389085	None	None			E6D, V35T, E40D, V60I, K122E, D123N, I135V, K173A, Q174K, D177E, V179I, Q207A, R211S, F214L, V245E, D250E, T286A, E291D, I293V, P294T	A
	H37159W2	08-101504	FJ389108	None	None			K11T, K20R, V21I, V35T, E40D, V60I, K122E, D123N, K173S, D177G, Q207A, R211S, V245Q, E248N, T286A, E291D, V292I, I293V	A
	J21783R9	08-101521	FJ389115	None	None			E6D, V35T, E40D, V60I, K122KE, D123N, I135V, K173A, Q174K, D177E, V179I, Q207A, R211S, F214L, V245E, D250E, T286A, I293V, P294T	A
	E21593W3	08-101544	FJ389118	None	None			K11T, K20R, V21I, V35T, E40D, V60I, K122E, D123N, K173S, D177G, Q207A, R211S, V245Q, E248N, T286A, E291D, V292I, I293V	A
Kousiappa (2009)	CY057	CY057	EU673388	None	None			K11T, V35T, T39K, E40D, K122E, D123S, A158S, K173L, Q174K, N175H, D177E, Q207A, R211S, V245M, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, D324E, I326V, Q334P	A
	CY171	CY171	EU673403	None	None			K11A, V35T, E36D, T39N, E40D, V60I, K122E, D123S, I135T, K173L, Q174K, D177E, T200TI, Q207AT, R211S, V245IK, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V	A
Mintsa-Ndong (2009)	MKK248	MKK248	AM903432	None	None			K11T, V35T, T39N, E40D, K49R, K122E, D123G, K173S, D177E, Q207N, V245Q	A
Thomson (2009)	915_1007	RU_915_1007	FJ009719	None	None			K11T, V35T, E36D, T39N, E40D, K122E, D123S, K173L, Q174K, D177E, T200TI, Q207AD, R211S, V245T, E248D, A272P, T286A, E291D, V292I, I293V, P294T	A
Vercauteren (2009)	pt2078	839276430	GQ398946	None	None			K30Q, K32G, A33C, L34T, V35L, E36N, I37F, E40D, V60I, K102Q, K122E, D123N, F171Y, K173A, Q174K, D177E, V179I, Q197L, T200A, Q207A, R211N, V245Q	A
	pt2059	930282707	GQ398965	None	None			K11T, V35T, E40D, K49R, V60I, D121H, K122E, D123S, I135T, E138A, K173S, Q174K, D177E, V179L, T200A, Q207A, E248D, A272P, K281R, L283I, T286A, E291D, V292I, I293V, P294T, E312D	A
	pt1501	4262857598	GQ399523	None	None			E36K, I37F, E40D, I50L, V60I, K122E, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245K	A
	pt1432	4663774098	GQ399592	None	None			K30Q, K32G, A33C, L34T, V35L, E36N, I37F, E40D, K49R, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, T200A, Q207D, R211S, F214L, V245K	A
	pt1332	5234413600	GQ399692	None	None			E36K, I37F, E40D, K49R, V60I, K122E, D123N, I135T, K173S, Q174K, V179I, Q207A, R211S, V245K	A
	pt1302	5399654061	GQ399722	None	None			E36K, I37F, E40D, V60I, G99A, K122Q, I135T, K173V, Q174K, D177E, V179I, Q207A, R211S, V245I	A
	pt1211	5962214103	GQ399813	None	None			K32G, A33C, L34T, V35L, E36K, I37F, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200E, Q207T, R211S, F214L, V245K	A
	pt1113	6548025931	GQ399911	None	None			E6D, V21I, V35T, E40D, V60I, K122E, D123N, I135T, E138A, S162H, K173I, Q174K, V179I, Q207A, R211N, V245E, D250E, K281R, T286A, E291D, V292I, I293V, P294T, E312N, I329V	A
	pt1101	6578125797	GQ399923	None	None			V35T, E36A, T39E, E40D, K43R, S48E, D123N, S162C, K173S, Q174K, D177E, Q207A, R211S, K281R, E291D, I293V, P294T, E312DN	A
	pt946	7577549413	GQ400078	None	None			K30Q, K32G, A33C, L34T, V35L, E36N, I37F, T39A, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200E, Q207T, R211S, F214L, V245K	A
	pt883	7919903120	GQ400141	None	None			E36K, I37F, T39A, E40D, E44G, V60I, F87V, K122E, D123N, I135T, K173S, Q174K, D177E, V179T, T200E, Q207T, R211S, F214L, V245K, L246S	A
	pt501	9909712185	GQ400523	None	None			V35T, E40D, K43R, K49R, V60I, K122E, D123G, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245M, D250E, T286A, E291D, V292I, I293V, P294T, E312D	A
	pt309	KO77cU6lrq	GQ400715	None	None			K11S, V35T, E40D, S48T, K49R, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200A, Q207AD, R211RK	A
	pt272	M84cPMYKg3	GQ400752	None	None			E6ED, K11KNT, V35T, E40D, K49R, K122E, D123G, K173S, Q174QK, D177E, V179I, Q207A, R211S, V245Q, L283LI, I293V, P294A, E312ED, G335D	A
Burda (2010)	06LPH19CM	06LPH19CM	GQ344999	None	None			E6K, K11V, L12S, V35T, E40D, K102Q, V118I, K122E, D123N, I135T, T139L, S162A, K173S, V179I	A
Carr (2010)	1445MV	01CM.1445MV	GU201516	None	None			V35T, T39K, E40D, D121Y, K122E, I142V, T165I, K173T, Q174K, D177E, V179I, T200A, Q207A, V245K, K275Q, K281R, T286A, E291D, V292I, I293V, E297R, A304E, E312N, I326T, G335D, R356K, M357K, G359T, A360T, A376V, T377M, K390R, A400T, K431Q, V466I, D471E, K476R, Q480H, H483Y, L491S, K512R, S519N, Q524E, K530R, V531I, A534S, A554S	A
Djoko (2010)	624	CD3729	FR666624	None	None			K11T, V35T, E40D, K49R, K122E, D123S, I142IV, A158S, K173S, D177E, V179I, Q207AS, R211RS, V245E, K281R, I293V, P294T, E312N, G335D, M357K, G359S, A360T, T369A	A
	628	CD0062	FR666628	None	None			K11T, K20R, K22KN, V35T, T39K, E40D, V60I, D121H, K122E, D123S, I135T, A158S, K173S, Q174R, D177E, G196E, Q207A, R211S, V245Q, D250E, T286A, I293V, E297R, A304E, E312D, Q334H, M357K, G359S, K366R, T369V	A
	634	CD4617	FR666634	None	None			E6K, K11T, V35T, T39N, E40D, K122E, D123G, T139V, K173S, T200TA, Q207N, V245Q, A272P, K277R, T286A, I293V, E297K, E312D, I326V, M357K, G359S, T369I	A
	660	CD2743	FR666660	None	None			I5IL, T27S, V35T, E36A, T39D, E40D, K122E, D123N, I142V, E169D, K173V, Q174K, D177E, I178L, V179I, G196E, T200A, Q207T, V245Q, E248D, A272S, Q278N, T286A, E291D, I293V, P294T, K311R, I326V, G335D, R356K, M357R, R358G, G359S, K366R, T369A, E370Q	A
Mosha (2010)	S8Pol	S8Pol	JQ071456	None	None			V35T, E40D, V60I, V118G, K122E, D123S, I135T, S162Y, K173S, Q174K, D177E, V179I, Q207A, R211S, V245E, D250E, T286A, E291D, V292I, I293V, P294T, E312T, G335D, M357K, G359S, K366R, T369A, I375V, A376T, T377M, T386A, A400T, T403M, E404D	A
	S23Pol	S23Pol	JQ071469	None	None			V35T, T39TI, E40D, V60I, K122E, D123S, E138Q, S162C, K173S, Q174K, V179I, Q207A, R211S, V245I, D250E, A272P, T286A, E291D, V292I, I293V, P294PT, E312D, I326V, G335D, R356EK, M357R, R358K, G359S, E370D, A371AV, I375V, T377TA, T386TA, K390KR, A400T, T403M, E404D	A
	S28Pol	S28Pol	JQ071473	None	None			V35T, T39TA, E40D, K49KR, V60I, K122E, D123S, I135IT, E138EA, T139TS, K173A, Q174K, D177DN, I178IM, V179I, T200A, Q207A, R211S, V245Q, E248DN, A272P, T286A, E291D, I293V, P294T, K311KR, S322SA, Q334QL, G335D, M357K, R358Q, G359S, K366R, E370A, A371V, I375V, A376V, T377M, A400T, T403M, E404D	A
	S47Pol	S47Pol	JQ071479	None	None			V35T, E40D, V60I, K122E, I135T, E138A, K173S, Q174K, D177E, I178M, V179I, Q207A, R211S, F214FL, V245K, D250E, T286A, E291D, V292I, I293V, E312D, Q334D, G335D, M357K, G359S, K366R, A371V, I375V, A376V, T377L, K390R, A400T, T403M, E404D	A
	S72Pol	S72Pol	JQ071489	None	None			E6D, V35T, E40D, K49KR, V60I, K122E, D123S, K173LS, Q174K, D177E, T200A, Q207A, R211S, D250E, T286A, E291D, V292I, I293V, P294T, E312D, I326IV, G335D, M357K, R358RK, G359S, K366KR, A371V, I375V, T377M, E399ED, A400T, T403M, E404D	A
	S73Pol	S73Pol	JQ071490	None	None			V35T, T39A, E40D, E53D, K102KR, K122E, D123S, I135T, K173L, Q174K, D177E, V179I, T200TI, I202V, Q207AD, R211K, E248D, T286A, E291D, V292I, I293V, P294T, E312D, G335D, Q340P, A376T, A400T, T403K	A
Tovanabutra (2010)	KECst_007	KECst_007	FJ623476	None	None			V35T, T39A, E40D, V60I, D121Y, K122E, I135T, K173S, Q174K, D177E, V179I, G196R, I202V, Q207A, F214L, V245K, K281R, T286A, E291D, V292I, I293V, P294S, E312D, G335D, M357R, G359S, A371V, I375V, A376V, T377L, E399D, A400I, T403M, E404D, E432D, V435E, N447Q, L452I, D471E, Q480H, H483Y, L491S, L503I, K512R, L517V, S519N, Q524K, K527G, E529D, V548I, A554S	A
	KECst_021	KECst_021	FJ623477	None	None			K11Q, V35T, T39A, E40D, S48T, V60I, D121H, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, V245E, K281R, T286A, E291D, I293V, P294T, P313T, V317A, G335D, M357K, G359S, K366R, T369A, A371V, I375V, A376V, T377L, A400T, T403M, E404D, E432D, V467I, T470P, D471E, Q480H, L491S, K512R, L517I, S519N, Q524K, K527E, E529D, A534S, A554S	A
Towler (2010)	11	337194-A	HM037814	None	None			V35T, T39K, E40D, K49R, V60I, K122E, I135T, T165I, K173L, Q174K, D177E, V179I, G196GE, T200A, I202V, Q207A, R211S, F214L, V245E, D250E, K281KR, T286TA, E291D, I293V, P294T	A
	439552-J	439552-J	HM037829	None	None			E6D, V35T, E40D, K49R, V60I, K122E, D123S, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245Q, D250E, K281R, T286A, E291D, I293V, P294T, E312D	A
	318244-S	318244-S	HM037837	None	None			E6K, K11T, E29D, V35T, E40D, K122E, D123S, S162H, K173A, D177E, V179I, Q207A, R211S, F214FL, V245Q, A272V, E291D, I293V, P294T, E312D	A
	328958-W	328958-W	HM037847	None	None			V35T, T39A, E40D, L80LF, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, F214L, V245Q, T286A, E291D, V292I, I293V, P294PT, I326T	A
	393958-V	393958-V	HM037867	None	None			K20R, V21I, V35T, T39A, E40D, V60I, K122E, D123N, F130L, T131P, I132*, I135T, K173S, Q174K, D177E, I178V, V179I, D185DN, Q207E, R211RK, V245E, D250E, K281R, T286A, E291D, I293V, P294T, E312D	A
	427986-C	427986-C	HM037874	None	None			E6D, V35T, E40D, K49KR, V60I, K122E, D123S, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, V245E, D250E, A272S, K277R, T286A, E291D, I293V, P294I, E312D, V317A	A
Yang (2010)	2010693451	2010693451	JQ616890	None	None			V35T, T39N, E40D, K43R, S162C, K173T, D177E, T200A, Q207E, R211K, V245E, E248NT	A
Charpentier (2011)	patng_19	patng_19	HQ021249	None	None			V35T, T39A, E40D, K102Q, K122E, D123N, I135K, I142IL, S162H, K173ST, V179I, Q207A, V245Q	A
Hamers (2011)	CP076301581	CP076301581	HQ993620	None	None			E28A, K32Q, V35T, T39K, E40D, I50V, V60I, V118I, K122E, D123S, I135T, A158S, T165I, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, F214L, V245E, T286A, I293V, P294T	A
	CP076301583	CP076301583	HQ993621	None	None			K11KT, K20R, V21VI, V35T, E40D, V60I, K122E, D123N, I135T, S162A, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245K, D250E, K281R, T286A, I293V, E297EK	A
	CP076301597	CP076301597	HQ993635	None	None			E6D, V35T, T39A, E40D, S48T, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, I202V, Q207A, R211S, V245K, D250E, S251H, T286A, E291D, V292I, I293V, P294T, E312D	A
	CP076301598	CP076301598	HQ993636	None	None			V35T, T39A, E40D, V60I, D121H, K122E, D123E, I135T, I142V, K173AS, Q174K, D177E, I178IMV, V179VI, T200TA, Q207A, R211S, V245M, D250E, A272AP, T286A, E291D, V292I, I293V, P294T, E312N	A
	CP076301605	CP076301605	HQ993642	None	None			E6D, V35T, T39A, E40D, S48T, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, I202V, Q207A, R211S, V245K, S251H, T286A, E291D, V292I, I293V, P294T, L295M, E312D	A
	CP076301610	CP076301610	HQ993647	None	None			K11T, V35T, E40D, K49R, V60I, K122E, D123N, I135T, K173T, Q174K, D177E, V179I, Q207A, R211N, V245Q, D250E, A272P, E291D, V292I, I293V, P294T, E312D, V317A	A
	CP076301616	CP076301616	HQ993652	None	None			K20R, V35T, E40D, K49R, V60I, K122E, D123N, I135T, T165I, K173A, Q174K, D177E, V179I, T200A, Q207A, R211K, V245I, D250E, T286A, E291D, V292I, I293V	A
	CP076301684	CP076301684	HQ993680	None	None			P4S, K11T, K20R, V21I, V35T, T39A, E40D, K122E, D123N, K173L, Q174R, D177E, V179I, I202V, Q207A, R211K, V245T, D250E, K277R, T286A, E291D, V292I, I293V, P294T, R307S, E308F, I309F, L310I, E312D, Y319C, D324E, L325I	A
	CP076301687	CP076301687	HQ993683	None	None			E6D, V35T, E40D, K49R, V60I, K122E, D123N, I135IT, K173A, Q174K, D177E, I178MV, V179I, Q207A, V245E, D250E, S268C, A272P, T286A, E291D, V292I, I293V, P294T, K311R, I326M, I329V	A
	CP076301690	CP076301690	HQ993686	None	None			E6D, K20R, V35T, E40D, K43KR, V60I, K122E, K173S, Q174K, D177E, V179I, T200TAEK, Q207A, R211S, F214L, V245E, D250E, A288AS, E291D, V292I, I293V, P294T	A
	CP076301708	CP076301708	HQ993703	None	None			E6D, V35T, T39TI, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, V179I, T200A, I202V, Q207N, R211S, V245K, D250E, S251V, V261VI, K281KR, T286A, E291D, V292I, I293V, P294T, E312D, S322A, G335D	A
	CP076301734	CP076301734	HQ993724	None	None			K11T, V21I, Q23K, V35T, T39K, E40D, K49R, V60I, K102Q, K122E, D123NS, K173S, V179I, T200A, I202V, Q207A, R211RK, V245Q, E248D, A272P, T286A, E291D, I293V, P294T, E312D	A
	CP076301741	CP076301741	HQ993731	None	None			E6D, E28A, V35T, T39N, E40D, V60I, D121H, K122E, I135T, K173S, Q174K, D177E, I178IM, T200A, I202V, Q207A, R211S, V245D, D250E, A272P, T286A, E291D, I293V, P294T, E308F, I309X, E312D, E328R, I329K, Q330Y, Q332K	A
	CP076301742	CP076301742	HQ993732	None	None			V35T, T39TA, E40D, K49R, V60I, K122E, D123N, I135T, I142V, K173T, Q174QR, D177E, T200A, Q207A, R211RS, V245Q, K281R, E291D, K311R, E312N	A
	CP076301749	CP076301749	HQ993738	None	None			V35T, E40D, K49R, V60VI, E79EK, K122E, D123N, I135T, S162C, E169D, K173A, Q174K, D177E, G196E, T200TA, Q207A, R211S, K281R, T286A, E291D, I293V, P294T, E297K, S322A	A
	CP076301760	CP076301760	HQ993748	None	None			V35M, T39KN, E40D, K122E, D123S, I178IM, Q207E, R211K, V245K, V261I, A272P, K275Q, K281R, T286A, E291D, V292I, I293V, P294T, E297K, A304E	A
	CP076302253	CP076302253	HQ993767	None	None			V21I, V35T, T39A, E40D, K49R, V60I, T69S, K122E, I135T, I142V, K173S, Q174K, D177E, V179VI, T200A, Q207E, R211AGST, F214FL, V245E, D250E, T286A, E291D, V292I, I293V	A
	CP076301640	CP076301640	HQ993786	None	None			V35T, E40D, K49R, V60I, K64KR, D121Y, K122E, I135T, S162A, K173S, Q174K, D177E, V179I, T200AE, Q207A, R211K, F214FL, V245K, D250E, K277KR, K281KR, T286A, E291D, V292I, I293V, P294T, G335D	A
	CP076302204	CP076302204	HQ993809	None	None			V35T, E40D, K49R, K122E, D123N, I135T, I142V, K173S, D177E, V179I, T200A, Q207A, R211RS, V245Q, K281R, T286A, E291D, I293V, E312D	A
	CP076302249	CP076302249	HQ993820	None	None			V35T, E40D, K49KR, V60I, D121H, K122E, I135T, K173A, Q174K, D177E, V179I, Q207A, R211S, F214FL, V245E, D250E, T286A, E291D, V292VI, I293V, P294AITV, E312ED	A
	CP076302250	CP076302250	HQ993821	None	None			V35T, E40D, V60I, G99GS, T107S, D121H, K122E, S162A, K173S, Q174K, D177E, G196E, T200A, Q207A, R211NS, D250E, S251T, T286A, E291D, V292I, I293V, P294T, E297R, A304E, E312D, V317A, D324E	A
	CP076302299	CP076302299	HQ993846	None	None			V35T, E40D, V60I, K64KR, D121H, K122E, I135T, K173L, Q174K, D177E, V179I, T200TA, E203ED, Q207A, R211S, V245I, D250E, T286A, E291D, V292I, I293V, P294T, E312D, V317A	A
	CP076302315	CP076302315	HQ993857	None	None			E6D, V35T, E40D, V60I, K122E, D123S, I135IT, S162A, K173S, Q174K, D177E, V179I, T200TA, Q207A, R211NS, D250E, S251Q, A272Q, K275Q, K281R, E291D, V292I, I293V, P294T, E312RS, S322T	A
	CP076302334	CP076302334	HQ993874	None	None			V21I, V35T, T39A, E40D, V60I, K122E, D123S, I135T, S162SAGT, T165TI, F171Y, K173S, Q174K, D177E, I178IM, T200TA, I202V, Q207A, R211S, F214L, I244V, V245T, D250E, A272P, K281R, T286A, E291D, V292I, I293V, P294T, V317E	A
	CP076304139	CP076304139	HQ993875	None	None			V35T, E40D, V60I, K122E, D123S, I135T, S162A, K173A, Q174K, D177E, G196V, T200A, Q207A, R211N, V245K, D250E, T286A, E291D, V292I, I293IV, P294T	A
	CP076304140	CP076304140	HQ993876	None	None			V35T, E40D, K43KR, K49KR, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245M, D250E, A272S, L283I, E291D, I293V, P294T, L295M, E312D	A
	CP076304177	CP076304177	HQ993892	None	None			P4PS, I5IV, E6EK, K20R, V21I, E28EK, K32KE, V35T, T39TK, E40D, V60I, K122E, I135T, K173S, Q174K, D177E, I178IV, V179IT, T200A, I202V, Q207A, R211S, F214FL, V245Q, E248D, D250E, T286A, E291D, I293V, P294T, E312D	A
	CP076304194	CP076304194	HQ993899	None	None			V35T, E36A, T39E, E40D, V60I, K122E, D123G, I135T, I142V, K173S, Q174K, D177E, V179I, T200TA, Q207DE, R211K, V245E, D250E, V254I, A272S, R284K, T286A, E291D, V292I, I293V, E312N	A
	CP076304197	CP076304197	HQ993901	None	None			P4H, V35T, E40D, S48ST, V60I, D121H, K122E, I135R, S162Y, K173L, Q174K, D177E, I178M, V179I, Q207A, R211S, V245E, D250E, T286A, E291D, V292I, I293V, P294T	A
	CP076304223	CP076304223	HQ993918	None	None			V35T, E36ED, E40D, V60I, K122E, D123S, I135T, S162Y, K173S, D177E, I178L, V179I, V189VI, T200A, Q207A, R211S, A272P, K275KR, Q278HN, K281KR, L282C, T286A, V292I	A
	CP076304224	CP076304224	HQ993919	None	None			K20R, V35T, T39A, E40D, V60I, K122KE, I135T, K173S, Q174K, D177E, V179I, G196E, Q197EK, T200TA, Q207AS, R211S, F214L, V245VI, D250E, K275Q, T286A, E291D, V292I, I293V, E312H	A
	CP076304225	CP076304225	HQ993920	None	None			V35T, E40D, K43R, V60I, K122E, D123S, I135T, K173LS, Q174K, D177E, V179I, T200A, Q207A, R211S, V245KQ, D250E, A272P, K277R, T286A, E291D, V292VI, I293V, P294AT, K311KR, E312D, V317VA	A
	CP076304262	CP076304262	HQ993950	None	None			I5V, E6Q, K11T, K20R, V35T, E40D, K122E, D123S, I142V, S163T, K173S, D177EG, T200K, I202V, Q207A, R211K, V245Q, E248N, T286A, E291D, I293V, P294T, E312D, E328D	A
	CP076304263	CP076304263	HQ993951	None	None			E6T, V35T, E40D, V60I, K122E, D123S, I135T, K173A, Q174K, D177E, V179I, Q207A, R211S, D250E, S251D, A272P, K281R, T286A, E291D, V292T, I293IV, P294I, E297K, A304E, S322T	A
	CP076304266	CP076304266	HQ993954	None	None			K20KR, V35T, E40D, V60I, D121H, K122E, I135T, T165TI, K173E, Q174R, D177DE, V179I, Q207A, R211S, V245E, D250E, S251H, K277R, T286A, E291D, V292I, I293V, P294T, E312N, E328D	A
	CP076304282	CP076304282	HQ993967	None	None			K11KT, V35T, T39A, E40D, K122E, D123N, I135T, I142V, K173S, Q174K, D177E, V179I, T200TA, Q207A, R211S, V245K, A272P, K277R, L282C, I293V, P294S	A
	CP076300740	CP076300740	HQ994930	None	None			K11T, K20R, V21I, V35T, T39A, E40D, K122E, D123N, I135T, K173L, D177E, V179I, I202V, Q207A, R211K, V245Q, E248D, T286A, E291D, P294T	A
	CP076301854	CP076301854	HQ994995	None	None			E6K, K11T, V35T, E40D, K43R, E44G, K122E, D123S, I135IT, K166KR, K173I, Q174K, D177E, I178L, V179I, I202V, Q207K, R211S, F214L, V245E, D250E, A272P, K277R, T286A, E291ED, I293V, P294T, E312D	A
	CP076301875	CP076301875	HQ995007	None	None			E6D, V8I, V35T, E40D, K49R, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, T200A, Q207A, R211S, V245E, D250E, A272P, K275Q, T286A, E291D, I293V, P294T	A
	CP076302068	CP076302068	HQ995029	None	None			K11T, K20R, V35T, T39K, E40D, K43R, K173S, Q174K, D177E, V179I, T200A, I202V, Q207A, R211G, F214L, V245Q, E248D, K281R, T286A, E291D, V292I, I293V, E312N	A
	CP076302072	CP076302072	HQ995032	None	None			K11T, K20R, V21I, V35T, T39K, E40D, K122E, D123N, K173S, D177E, I178V, V179I, T200A, I202V, Q207A, R211G, V245Q, E248D, K277R, K281R, T286A, E291D, V292I, I293V	A
	CP076302991	CP076302991	HQ995063	None	None			E6D, V35T, E40D, K49R, I50V, V60I, K122E, D123S, I135T, S162H, K166Q, K173A, Q174K, D177E, V179I, Q207A, R211S, V245E, D250E, K277R, T286A, E291D, I293V, P294T	A
	CP076303002	CP076303002	HQ995070	None	None		F227L	E6K, K11T, V35T, E40D, K82KR, K122E, D123N, K173AS, V179I, Q207A, R211S, F214L, V245E, D250E, E291D, I293V, P294T, E312D	A
	CP076303014	CP076303014	HQ995079	None	None			V35T, T39A, E40D, K122E, D123NS, K173A, Q174K, D177E, V179I, T200A, Q207E, R211K, F214L, V245K, D250E, A272P, L283I, I293V, P294A	A
	CP076300728	CP076300728	HQ995099	None	None			V35T, E40D, V60I, D121H, K122E, I135T, E138A, K173AS, Q174K, D177E, I178L, V179I, G196GE, T200A, I202V, Q207N, R211S, F214L, V245M, D250E, T286A, E291D, I293V, P294T	A
	CP076300835	CP076300835	HQ995110	None	None			V35T, E40D, V60I, K122E, D123S, K166R, K173L, Q174K, D177E, I178M, V179I, T200A, Q207A, R211S, V245E, A272P, K277R, T286A, E291ED, V292I, I293V	A
	CP076300847	CP076300847	HQ995114	None	None			E6D, K11Q, K20R, V35T, T39A, E40D, V60I, V118I, K122E, D123N, I135T, K173L, Q174K, D177E, V179I, Q207A, R211S, F214L, V245Q, E248D, T286A, E291D, I293V, P294T	A
	CP076300857	CP076300857	HQ995121	None	None			E6D, V35T, E40D, K49R, V60I, K122E, D123S, I135T, E169ED, K173S, Q174R, D177E, V179I, T200A, Q207A, R211S, V245E, D250E, A272P, K281R, T286A, I293V, P294T	A
	CP076300868	CP076300868	HQ995127	None	None			K11Q, V35T, E40D, V60I, D121DY, K122E, D123G, I135T, K173A, Q174K, D177E, V179I, T200A, Q207A, R211S, D250E, T286A, E291D, V292I, I293V, P294T	A
	CP076300878	CP076300878	HQ995133	None	None			E28EG, V35T, E40D, V90VI, K104KR, K122E, D123NS, K173S, Q174QK, T200AE, Q207A, R211K, V245Q, K281R, T286A, E291D, V292I, I293V, L310*	A
	CP076301815	CP076301815	HQ995159	None	None			V35T, T39A, E40D, K122E, D123NS, K173A, Q174K, D177E, V179I, T200TA, Q207E, R211K, F214L, P243PS, V245K, D250E, A272P, L283I, I293V, P294A	A
	CP076301818	CP076301818	HQ995160	None	None			V35T, E40D, K49R, V60I, K122E, D123N, K173L, Q174K, D177E, V179I, Q207A, P243S, V245K, E248D, D250E, A272S, V276I, K277R, Q278N, L283I, T286A, E291D, V292I, I293V, P294T	A
	CP076301833	CP076301833	HQ995166	None	None			K11T, K20R, V21I, V35T, T39R, E40D, K43E, K49R, V60I, D121H, K122E, K173S, Q174K, D177E, I202V, Q207A, R211N, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T	A
	CP076302054	CP076302054	HQ995204	None	None			E6D, K11Q, K20R, V35T, T39A, E40D, V60I, V118I, K122E, D123N, I135T, K173L, Q174K, D177E, V179I, Q207A, R211S, F214L, V245Q, E248D, T286A, E291D, I293V, P294T	A
	CP076302066	CP076302066	HQ995206	None	None			E6D, K20KR, V35T, E40D, K49R, V60I, K122E, D123S, I135T, E169ED, K173S, Q174R, D177E, V179I, T200A, Q207A, R211S, V245E, D250E, A272P, K281R, T286A, I293V, P294T	A
	CP076303038	CP076303038	HQ995223	None	None			E6K, K11T, V35T, E40D, K122E, D123N, K173A, V179I, Q207A, R211S, F214L, V245Q, A272P, K275Q, V276I, E291D, I293V, P294T	A
	CP076303052	CP076303052	HQ995234	None	None			E6D, V35T, E40D, K49R, I50V, V60I, K122E, D123S, I135T, T165I, E169D, K173A, Q174K, D177E, V179I, G196E, T200TA, Q207A, R211K, V245E, D250E, A272AP, K277R, T286A, I293V, P294T	A
	CP076303063	CP076303063	HQ995243	None	None			E6D, K20R, V35T, T39TA, E40D, V60I, D123E, K166KR, K173L, Q174KR, D177E, V179I, T200TA, Q207A, R211S, V241I, V245E, D250E, A272S, T286A, E291D, V292VI, I293V, P294PT	A
	CP076303082	CP076303082	HQ995259	None	None			P4T, K20R, V21I, V35T, T39A, E40D, P52R, V60I, K122E, D123S, T165I, E169D, K173S, Q174R, D177E, I178L, T200A, I202V, Q207E, R211K, V245Q, E248D, A272P, K281R, T286A, E291D, I293V, P294T	A
	CP076303126	CP076303126	HQ995300	None	None			V35T, E40D, K49R, V60I, K122E, D123S, T139K, S163T, T165I, K173Q, Q174K, N175NH, D177DE, V179I, T200A, Q207A, R211K, F214FL, V245Q, E248V, D250E, K281R, T286A, E291D, I293V, P294T	A
	CP076303134	CP076303134	HQ995306	None	None			K11T, V35T, E40D, I50V, V60I, K122E, D123G, I142V, K173T, D177E, V179I, T200A, I202V, Q207A, R211S, V245Q, A272P, K277R, I293V, P294T, L295M	A
	CP076300715	CP076300715	HQ995317	None	None			K20R, V35T, E40D, V60I, V118I, D121H, K122E, I135T, E138A, K173A, Q174R, D177E, I178V, V179I, Q207A, R211S, V245K, A272P, K277R, T286A, E291D, V292I, I293V, P294T	A
	CP076300737	CP076300737	HQ995326	None	None			K11T, K20R, V21I, V35T, T39K, E40D, K49R, V60I, K122E, D123GS, E138A, K173S, Q174K, V179I, Q197QP, I202V, Q207E, R211K, V245Q, E248N, A272P, K281KR, T286A, E291D, V292I, I293IV	A
	CP076300739	CP076300739	HQ995327	None	None			E6N, K20R, V35T, T39A, E40D, K49R, I50V, V60I, K104R, K122E, D123NS, I135T, S162A, K173L, Q174K, D177E, Q207E, R211K, V245Q, K281R, I293V, P294T	A
	CP076300755	CP076300755	HQ995331	None	None			K11T, K20R, V21I, V35T, T39R, E40D, K122E, D123NS, S162A, K173S, D177E, V179I, I202V, Q207A, R211K, V245Q, E248D, K281R, T286A, E291D, V292I, I293V, P294T, L295M	A
	CP076300756	CP076300756	HQ995332	None	None			P4S, E6S, K11T, K20R, V21I, V35T, T39A, E40D, K122E, D123G, S162A, K173S, Q174K, D177E, V179I, I202V, Q207A, R211S, V245Q, E248D, T286A, E291D, V292I, I293V	A
	CP076300762	CP076300762	HQ995334	None	None			V35T, E40D, V60I, D121H, K122E, D123E, I135T, I142V, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, D250E, S251D, A272P, T286A, A288AT, E291D, V292I, I293V, P294T	A
	CP076300770	CP076300770	HQ995339	None	None			K11T, K20R, V21I, V35T, T39K, E40D, K49R, V60I, K122E, D123GS, E138A, K173S, Q174K, V179I, I202V, Q207E, R211K, V245Q, E248N, A272P, K281R, T286A, E291D, V292I, I293V	A
	CP076300774	CP076300774	HQ995342	None	None			I5V, E6D, T27S, K32R, V35T, T39S, E40D, K122E, D123S, I142V, S162C, K173S, Q174K, D177E, I178L, V179T, T200A, Q207D, R211K, V245T, D250E, T286A, E291D, I293V, E312T	A
	CP076300781	CP076300781	HQ995347	None	None			K11KT, V35T, E40D, K49R, V60VI, K122E, D123S, I135IT, K173L, D177E, V179I, T200A, Q207A, R211S, V245Q, K281R, E291D, I293V, P294T	A
	CP076301891	CP076301891	HQ995370	None	None		K103N	P4T, E6D, V35T, E40D, V60I, K122E, D177DE, I178IMV, T200A, Q207D, R211K, V245Q, A272P, Q278H, T286A, I293V, L295R	A
	CP076301904	CP076301904	HQ995380	None	None			E6S, V35T, E40D, V60I, K102Q, K122E, D123N, I135T, K173A, Q174K, D177E, V179I, Q207E, R211S, I244V, V245K, D250E, A272P, K281R, L283I, I293V, P294T, K311R	A
	CP076301906	CP076301906	HQ995381	None	None			I31IK, V35T, T39A, E40D, K49R, V60I, K122E, D123N, I135T, I142V, K173IL, Q174K, D177E, V179I, Q207A, R211S, V245E, D250E, E291D, V292I, I293V, P294T	A
	CP076301911	CP076301911	HQ995386	None	None			E6S, V35T, E40D, V60I, K102Q, K122E, D123N, I135T, K173A, Q174K, D177E, V179I, I195IL, Q207E, R211RS, I244V, V245K, D250E, A272P, K281R, L283I, I293V, P294T, K311R	A
	CP076301926	CP076301926	HQ995397	None	None			V35T, E40D, V60I, K122E, D123N, I135T, S162C, K173S, Q174K, D177E, V179I, T200TA, Q207A, R211S, E248D, K249Q, D250E, K275Q, V276T, T286A, I293V, P294T	A
	CP076301938	CP076301938	HQ995404	None	None			K11AT, T27TS, V35T, E40D, K49KR, K122E, D123N, K173LS, Q174EK, D177E, V179I, T200A, Q207A, R211S, V245Q, K277R, E291D, I293V, P294A	A
	CP076301962	CP076301962	HQ995426	None	None			V35T, T39A, E40D, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, T200A, I202V, Q207D, R211S, V245K, D250E, A272P, K277R, L282C, L283I, I293V	A
	CP076302924	CP076302924	HQ995482	None	None			V35T, E40D, K49R, I50M, V60I, K122E, D123S, I135T, K173I, Q174K, V179I, Q207A, R211S, V245K, D250E, A272P, K277R, T286A, I293V, P294T, E312D	A
Kasang (2011)	3313	3313	HM572370	None	None			K32KR, V35T, E40D, K49R, V60I, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245M, D250E, S268C, K275Q, K281K*, T286TA, E291D, V292VI, I293V, P294T, E298EK, E312N	A
	29744	29744	HM572377	None	None			K11T, K20R, K22R, V35T, E40D, K49R, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, T200A, Q207A, R211N, A272P, K277R, L282C, L283I, R284K, I293V, K311R, D324E, I326L	A
	2029	2029	HM572381	None	None			K11T, K20R, V35T, E40D, V60I, D121H, K122E, D123S, I135T, K173A, Q174K, D177E, V179I, T200TI, Q207G, R211S, I244V, D250E, S251N, T286A, E291D, V292I, I293V, P294T, E312D, I326IV, I329IV	A
	32646	32646	HM572389	None	None			K11T, V35T, E40D, K122E, D123S, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, F214L, V245Q, E248N, D250E, A272S, K281R, T286A, I293V, P294T, L295M, E312D, V317A, I326V	A
	6015	6015	HM572394	None	None			K11T, K20R, V21I, V35T, T39KR, E40D, K46KR, K64KR, K122E, D123N, K173S, D177E, V179I, I202V, Q207A, R211S, V245Q, E248N, E291D, I293V, P294T, E312DN, V317VA	A
Ndembi (2011)	NTCPS729	NTCPS729	HQ702616	None	None			V35T, E40D, V60I, K122E, D123N, P133R, Y146S, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S	A
	NTCPS731	NTCPS731	HQ702628	None	None			E6D, V35T, E40D, V60I, K122E, D123S, I135T, E138A, K173L, Q174K, V179I, G196K, T200A, Q207A, R211S	A
	AICPS107	AICPS107	HQ702634	None	None			V35T, E40D, K122E, D123S, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S	A
	AICPS438	AICPS438	HQ702638	None	None		G190A	E6D, V35T, T39A, E40D, V60I, K122E, D123S, I135T, I142V, K173A, Q174K, D177E, V179I, T200I, Q207A, R211S	A
	AICPS283	AICPS283	HQ702652	None	None			E6D, I31V, V35T, C38R, T39I, E40D, K43N, K49R, V60I, K122E, D123S, I135T, T165I, K173S, D177E, T200A, I202V, Q207A, R211S	A
	NTCPS709	NTCPS709	HQ702661	None	None			E6D, V35T, E36D, E40D, K49R, V60I, D121H, K122E, D123S, I135T, I142V, S162A, K173S, Q174K, D177E, V179I, T200A, Q207A	A
	AICPS106	AICPS106	HQ702675	None	None			E6D, V35T, T39A, E40D, S48T, V60I, K122E, D123N, I135T, G141A, S162C, K173A, Q174K, D177E, T200A, Q207E	A
Caron (2012)	Gab014268	Gab014268	HQ541900	None	None			K20R, V35T, T39K, E40D, K122E, D123N, K173S, G196K, T200A, I202V, E204G, Q207A, R211S, V245Q, D250E	A
	Gab082238	Gab082238	HQ541937	None	None			V35T, T39K, E40D, D121Y, K122E, D123G, I135T, S162F, E169D, K173A, Q174K, N175Y, D177E, G196E, T200A, Q207A, R211S, V245M, D250E	A
	Gab082180	Gab082180	JN705002	None	None			K11T, V35T, T39K, E40D, K102Q, D123E, I135V, S162A, T200A, Q207N, R211K, V245Q	A
Frange (2012)	130217GJR	130217GJR	JQ292410	None	None			V35T, T39L, E40D, D121Y, K122E, D123G, I142V, A158S, S162A, T165TI, E169D, K173AT, Q174K, D177DE, I178M, V179I, G196E, T200A, Q207A, R211S	A
	751607LAC	751607LAC	JQ292415	None	None			V10X, V35T, E40D, V60I, D121H, K122E, D123G, I135T, S162A, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, D250E	A
	690207CUBF	690207CUBF	JQ292418	None	None			P4S, K11T, V35T, T39A, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200E, Q207T, R211S, F214L	A
	870105EPS	870105EPS	JQ292421	None	None			T39A, E40D, K49R, E53Q, T107S, G112A, K122E, D123S, T131TP, T139A, K173S, Q174K, D177E, V179I, T200A, Q207A, R211K, V245E	A
	490109JT	490109JT	JQ292443	None	None			T39A, E40D, S48T, V90VA, K122E, D123N, K173T, Q174K, D177E, Q207A, R211K	A
Hassan (2012)	RS09000890	RS09000890	HQ441635	None	None			V35T, E40D, K49R, V60I, K122E, I135T, K173S, Q174K, D177E, V179I, I195IL, Q207A, R211S, D250E, K281KR, T286A, E291D, I293V, P294T, E312D	A
	RS09000891	RS09000891	HQ441636	None	None			V8I, P9PQ, V35T, E40D, V60I, K122E, I135T, K173L, Q174K, D177E, V179I, Q197QL, Q207A, R211S, D250E, A272P, K277R, T286A, E291D, V292I, I293V, P294T, L301I	A
	RS09000911	RS09000911	HQ441656	None	None			V35T, E40D, V60I, D121H, I135T, K173L, Q174K, D177E, V179I, T200M, Q207A, R211K, F214L, V245E, T286A, E291D, V292I, I293V, T296S, E312T	A
	RS09000913	RS09000913	HQ441658	None	None			V35T, E40D, V60I, K122E, K173S, Q174K, D177E, V179I, T200A, Q207D, R211RK, D250E, K281R, T286A, E291D, V292I, I293V, L295M	A
	RS09000941	RS09000941	HQ441683	None	None			E6D, V35T, E40D, K49R, V60I, K64KR, T69S, K122E, D123S, I135T, S162C, K173A, Q174K, D177E, I178L, V179I, Q207A, R211AT, V245E, E248D, D250E, A272P, K275Q, E291D, I293V, P294IV, E312D	A
	RS09000966	RS09000966	HQ441704	None	None			E29D, V35T, T39A, E40D, K49R, I135T, I142V, K173T, D177E, V179I, T200A, Q207A, R211RS, P243A, V245Q, E248D, E291D, I293V, P294T, E312D	A
	RS11000253	RS11000253	JQ698353	None	None			K20R, V21I, V35T, T39A, E40D, V60I, K64KR, K122E, D123G, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, V245E, D250E, T286A, E291D, V292I, I293V, P294T, E312D	A
	RS11000256	RS11000256	JQ698355	None	None			K32Q, V35T, E40D, K49R, V60I, K122E, D123N, I135T, E169D, K173L, Q174K, D177E, V179I, T200A, Q207A, R211K, A272P, I293V	A
	RS11000259	RS11000259	JQ698357	None	None			P4H, K11KE, K20R, V35T, T39A, E40D, D121H, K122E, D123S, I135T, S162C, E169D, K173S, Q174K, D177E, V179I, T200A, Q207A, R211S, V245VI, E248ED, D250E, S251HR, T286A, E291D, I293V, P294T, E312ED	A
	RS11000265	RS11000265	JQ698361	None	None			V35T, T39A, E40D, V60VI, K122E, D123S, T131TP, I135T, I142IV, S162A, K173A, Q174K, Q207A, R211NS, V245E, E248D, D250E, A272P, E291D, V292I, I293V, P294T, L295M, E312D, V314VG	A
	RS11000274	RS11000274	JQ698365	None	None			V8I, V35T, E40D, V60I, D121H, K122E, I135T, R143RK, K173L, Q174K, D177E, V179I, Q207A, R211K, E248D, D250E, K277R, T286A, E291D, I293V, P294T, E312EK	A
	RS11000281	RS11000281	JQ698371	None	None			E6D, V35T, E40D, K49KR, I50V, V60I, K122E, D123S, I135T, E169D, K173A, Q174K, D177E, I178V, V179I, T200A, Q207AD, R211K, V245E, D250E, K281KR, R284K, T286A, E291D, I293V, P294T, E312D	A
	RS11000290	RS11000290	JQ698377	None	None			V35T, T39K, E40D, D121H, K122E, D177E, I178M, G196E, T200A, Q207E, R211K, P243S, V245K, A272P, K281R, E291D, V292I, I293IV, E297R, A304E, E312N	A
	RS11000301	RS11000301	JQ698386	None	None			K11T, K20R, V21I, V35T, T39KR, E40D, V60I, K122E, D123N, I135T, S163T, T165I, K173S, D177E, V179I, Q197K, T200E, I202V, E203Q, Q207D, R211K, F214L, V245Q, E248D, T286A, E291D, I293V, P294T, E312N	A
	RS11000310	RS11000310	JQ698392	None	None			E6K, K11T, V35T, E36D, T39A, E40D, V118I, K122E, D123N, I135T, K173A, D177E, V179I, V189I, Q207A, R211K, F214L, V245Q, D250E, V276I, Q278N, T286A, E291D, I293V, P294T, E312D	A
	RS11000340	RS11000340	JQ698413	None	None			V35T, E40D, K49R, V60I, D121H, R125RK, I135T, K173L, Q174K, Q207A, R211N, V245E, D250E, K277R, T286A, E291D, V292I, I293V	A
	RS11000341	RS11000341	JQ698414	None	None			V35T, E40D, V60I, D121H, K122E, I135T, R143RK, K173L, Q174K, D177E, V179I, Q207A, R211S, V245E, D250E, A272P, K275Q, K281R, T286A, E291D, V292I, I293V, E312D	A
Karlsson (2012)	SE_9	SE_9	JQ698670	None	None			V35T, E36A, T39E, E40D, D123N, I142V, K173L, Q174K, D177E, V179I, T200A, I202V, Q207A, R211S, F214L, V245T	A
	SE_34	SE_34	JQ698689	None	None			E28A, V35T, E40D, K49R, V60I, D121H, K122E, I135T, S162C, K173L, Q174K, D177E, I178M, V179I, Q207A, R211S, V245I, E248D, D250E	A
	SE_53	SE_53	JQ698704	None	None			V35T, E36ED, T39AS, E40D, K122E, D123S, I135T, K173A, D177E, V179I, Q207K, R211S, F214L, V245T	A
	SE_207	SE_207	JQ698812	None	None			E6D, V35T, T39K, E40D, G45R, V60I, K122E, D123S, I135T, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, F214L, V245Q, S251N	A
Nazziwa (2012)	1011601	1011601	JX498971	None	None			V35T, T39A, E40D, V60I, K122E, D123S, I135T, I142V	A
	5044501	5044501	JX499001	None	None			I5V, V35T, T39A, E40D, V60I, K122E, D123S, I135T, I142V, D177E, I178M, V179I, T200I, Q207E, R211K, P243T, V245Q, T286A, E291D, I293V, P294T	A
Reynolds (2012)	J0747	J0747-0	JN652167	None	None			V35IT, E40D, K49R, K122E, D123N, I135T, K173LS, D177E, V179I, T200A, Q207A, R211S, V245Q, E291D, P294T	A
Sigaloff (2012)	KECGP001	KECGP001	JN628461	None	None			V21I, V35T, T39A, E40D, V60I, K122E, D123S, I135T, S162C, K173S, Q174R, D177E, G196E, Q207A, R211S	A
	KECGP051	KECGP051	JN628467	None	None			K20R, I31V, V35T, T39I, E40D, K122E, D123N, K173A, Q174K, D177E, V179I, T200A, I202V, Q207A, R211K	A
	KECGP061	KECGP061	JN628470	None	None			V35T, E40D, K49R, I50V, V60I, K122E, D123S, I135T, K173S, D177E, V179I, Q207A, R211S	A
	KEKSN404	KEKSN404	JN628472	None	None			E6D, I31V, V35T, T39I, E40D, K49R, V60I, D121H, K122E, D123E, D177E, Q207E, R211K	A
	KEKSN406	KEKSN406	JN628473	None	None			V35T, E40D, V60I, K122E, D123S, K166R, K173A, Q174K, D177E, T200A, Q207A, R211S	A
	KELKN201	KELKN201	JN628482	None	None			E6D, I31V, V35T, E40D, V60I, K122E, D123N, I135T, K173S, Q174K, V179I, T200A, I202V, Q207A, R211S, F214L	A
	KELKN227	KELKN227	JN628499	None	None			V35T, T39I, E40D, V60I, K122E, A158S, Q174K, D177E, T200A, Q207A, R211S, F214L	A
	KELKN231	KELKN231	JN628501	None	None			V35T, E40D, V60I, K102Q, D121Y, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, Q207A, R211N, F214L	A
	KELKN242	KELKN242	JN628508	None	None			E6D, V21I, K32R, V35T, E40D, K49R, V60I, V90I, K122E, D123S, I135T, K173L, Q174K, D177E, T200A, Q207A, R211S	A
	KELKN246	KELKN246	JN628510	None	None		K101N	I2M, I5M, E6D, L12S, P14S, T27I, I31V, K32E, V35A, E40D, K43L, K46R, I47L, K49R, V60I, P97Q, K104E, D121H, K122E, D123S, I135T, E138D, K173S, Q174K, D177E, V179I, T200A, I202V, Q207A, R211K	A
	KELKN253	KELKN253	JN628516	None	None			E6D, V35T, E40D, V60I, D121N, K122E, D123S, K173V, Q174K, V179I, T200E, Q207A, R211S	A
	KELKN260	KELKN260	JN628519	None	None		K103N	E6D, I31V, V35T, E40D, K102R, K122E, D123N, I142M, K173S, Q174R, D177E, V179I, Q197K, T200A, I202V, Q207A, R211N	A
	KELKN262	KELKN262	JN628521	None	None		K103N	E6D, I31V, V35T, E40D, S48T, K49R, K122E, D123N, I135T, I142V, K173T, Q174K, D177E, Q207E, R211K	A
	KELKN268	KELKN268	JN628526	None	None			K20R, I31V, V35T, T39I, E40D, K49R, V60I, K122E, D123N, I135T, K173L, Q174K, D177E, V179I, Q207A, R211S	A
	KEMGO613	KEMGO613	JN628532	None	None			I2T, E6D, K11E, K20R, V35T, T39I, E40D, E42K, V60I, K104E, V118I, K122E, D123S, Q145W, K173L, Q174K, D177E, V179I, L193I, Q197K, R199G, T200A, Q207D, F214L	A
Ssemwanga (2012)	RCC_TDR_358561	RCC_TDR_358561	JQ266029	None	None			E6K, K11Q, V35T, T39A, E40D, K122E, D123N, K173S, D177E, V179I, T200A, I202V, E204D, Q207A, F214L	A
	RCC_TDR_480631	RCC_TDR_480631	JQ266033	None	None			V35T, T39A, E40D, K49R, V60I, V118I, K122R, I135T, Q145C, K173L, Q174K, D177E, V179T, Q207A, R211S, F214L	A
	RCC_TDR_483515	RCC_TDR_483515	JQ266050	None	None			V35T, T39A, E40D, V60I, V118I, I135T, Q145C, K173L, Q174K, D177E, V179T, T200A, Q207A, R211S, F214L	A
Ssemwanga (2012)	3272HR	3272HR	JF800198	None	None			V35T, E40D, V60I, K166R, K173L, Q174K, D177E, V179I, Q207A, R211S	A
	6356HR	6356HR	JF800205	None	None			E6K, K20R, V35T, E40D, V60I, K101Q, K122E, K173S, Q174K, D177E, T200A, Q207E, R211S	A
Yang (2012)	KN-44	KN-44	JQ616920	None	None			K20R, V35T, E40D, V60I, D121H, K122E, I135T, T165TI, K173V, Q174K, D177E, V179I, Q207A, R211S, V245K	A
	KN-54	KN-54	JQ616923	None	None			V21I, V35I, E40D, V60I, D121H, K122E, D123G, I135IR, K173S, Q174K, V179I, Q207A, R211N	A
	KN-96	KN-96	JQ616925	None	None			K20R, V21I, V35T, T39A, E40D, V60I, K122E, D123N, I135T, K173S, Q174KR, D177E, V179I, T200A, I202V, Q207A, R211S	A
	KEN-68T	KEN-68T		None	None			E36EK, I37F, C38C*, E40D, K49R, V60I, K122E, D123S, I135T, K173S, Q174K, V179I, T200A, Q207A, R211S, V245T	A
Youngpairoj (2012)	cm8bb	cm8bb	DQ166432	None	None			E6N, V8I, K11T, V35T, E40D, V118I, D121H, K122E, D123S, I142V, F171Y, K173S, D177E, I202V, Q207A, R211S, F214L, V245Q, E248D, K275Q, V276I, R284K, T286A, V292I, I293V, P294T, L295M, E297Q, E312N, S322T, M357K, G359S, T369A, A371V, I375A, K390R, A400L, E432D, V435L	A
Frentz (2013)	EHR-09113	EHR-09113	JX299682	None	None			K30Q, K32G, A33C, L34T, V35L, E36N, I37F, E40D, K49R, V60I, V90VI, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, Q197QE, T200A, E203ED, Q207A, R211RKNS, V245KN	A
	EHR-14086	EHR-14086	JX299772	None	None			V35T, E40D, I50V, V118I, K122E, D123DN, I135T, I142IT, T165I, K173S, Q174QR, V179VI, E194ED, T200TA, Q207A, R211S, F214L, V245L	A
	EHR-16074	EHR-16074	JX299809	None	None			E6D, V35T, T39K, E40D, V60I, W88WC, K122E, D123S, I135T, K166KR, E169ED, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, F214L, V245Q	A
	EHR-49747	EHR-49747	JX300367	None	None			V35T, E40D, K49R, V60I, K173L, Q174K, D177E, V179I, Q207A, R211K, V245K	A
	EHR-76153	EHR-76153	JX300841	None	None			T39K, E40D, K122E, D123S, A158S, K173S, Q174K, D177E, Q207A, R211S, V245M	A
Hawke (2013)	20823470	20823470	KC238048	None	None			K11Q, V21I, V35T, T39A, E40D, T58SY, D121Y, K122E, D123G, I135T, K173S, Q174K, D177E, I178V, V179I, T200A, Q207A, R211S, V245EQ	A
	5545224 H	5545224 H	KC238184	None	None			K11T, V35T, E40D, K122E, D123S, S162A, K173S, D177E, Q207A, R211S, F214L, V245Q, A272T	A

Reverse Transcriptase Inhibitors

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