<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Reverse Transcriptase Inhibitors

Subtype D
Gene RT
Mutation V90I
Rx >= 1 NNRTI
(+/- NRTI)
IncludeMixtures No
References 15
Patients 19
Isolates 20
 
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Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# NRTIs NNRTIsNRTIDRMs NNRTIDRMs OtherMutSubtype
Eshleman (2001)SE227SE227AF388139NoneNVP  V35T, K49R, V60I, V90I, D121Y, K122E, D177E, I178M, I180V, T200A, I202V, Q207D, R211K, V245K, D250E, A272P, K277R, L282C, T286A, I293V, E297V, E312RD
Eshleman (2004) SE227_7dAY428680NoneNVP  V35T, K49R, V60I, V90I, D121Y, K122E, D177E, I178M, I180V, T200A, I202V, Q207D, R211K, V245K, D250E, A272P, K277R, L282C, T286A, I293V, E297V, E312RD
 ESH_Pat75SE66_7dAY428674NoneNVP  V35T, T39K, V60I, V90I, K122E, D123N, I135T, I142T, I178M, T200I, Q207G, R211K, V245K, D250EQ, A272P, K277R, L282C, L283I, T286A, I293V, I329VD
Weber (2005)C55937C55937AY6775283TC, D4T, AZTNVP K101NV35T, E40D, K49R, V60I, I63IL, V90I, S162A, E204D, Q207E, V241I, V245Q, D250E, A272S, T286A, I329L, G333ED
 01F868601F8686AY677603AZT, 3TCEFV, NVPM184VK101E, G190AK20R, W24WC, V35T, T39M, K49R, V60I, V90I, K122E, D177E, I178M, T200I, Q207E, R211K, V245K, E248D, D250E, A272P, K277R, L282C, L283I, T286A, A288P, I293V, E297K, S322AD
Baxter (2006)48-41654165-30410DQ878398NRTINNRTIM41L, D67N, K70R, T215F, K219QK101E, G190SV35T, K49R, V60I, T69TN, V90I, A98S, V118I, K122E, I135T, E138A, T165I, E169D, R172RK, D177E, I178L, V179X, Q197E, E203A, Q207E, R211K, F214L, L228H, V245T, D250E, A272P, K277R, T286A, E297KR, I329L, G335D, M357MT, G359S, A376T, S379C, T386AD
Hawkins (2009)R61ZZR61FJ931300TDF, 3TCNVPK65R, M184IK103N, Y181CV35T, T39M, K49R, S68SDGN, V90I, K102R, K122E, T165I, D177E, I178M, Q207E, R211K, F214L, V245T, D250E, A272P, K277R, T286A, E297K, K311R, I329VD
Ndembi (2010)13075D_P113075GQ409548AZT, 3TCNVPM184VV106AV35T, E40D, K49R, T58S, V60I, V90I, D121H, K122E, D177E, I178M, T200M, Q207G, R211KD
Aulicino (2011)ARN272RLDARN272RLDFJ525856NRTINNRTIM41L, D67N, T69D, K70R, L74V, M184V, L210W, T215Y, K219HA98G, K101E, V108I, Y181C, G190AS3C, K20R, E28A, V35T, T39E, E44D, V60I, V90I, L109I, K122E, I135V, I142V, S162N, I167V, V179I, T200A, E203K, Q207E, H208Y, R211KD
Charpentier (2011)160CP 001 1090 D4T, 3TCNVPK65RK101KE, Y181C, G190AK20KR, V35T, T39TA, E40D, K49R, V60I, T69TA, V90I, D121Y, K122E, D123E, S162A, Q174H, D177E, T200A, E203EK, Q207E, R211K, L228LR, P243H, V245E, D250E, A272S, L283I, I293V, P313TD
Fokam (2011)CIRCB-1519CIRCB-1519JQ796144AZT, 3TCNVPV75M, M184V, T215TSK103NE6K, T7P, P9A, K11Q, V21VI, V35T, K49R, V90I, K122E, D123N, I135T, E138EG, S162N, R172K, D177E, I178L, V179IT, Q182S, T200A, E204K, Q207E, R211K, F214L, D237E, V245K, D250E, A272P, V276VI, K281KR, L283LI, T286A, E297K, K311R, D324DE, Q334E, G335S, T338S, Y339W, R356K, R358K, G359S, A371TD
Afonso (2012)ANG32ANG32JN937045NRTINNRTID67G, K70R, L74I, M184V, T215F, K219QK101E, G190AP4N, I31L, V35T, T39A, E40D, K49R, V60I, S68G, V90I, D121C, K122E, E138G, E169D, D177E, I178L, G196E, T200A, E203D, E204K, Q207D, R211K, F214L, V245T, E248D, K249R, D250KD
Jones (2012)203362203362JN671308NRTINNRTIK70RA98AGK20R, V35T, T39R, V90I, D121HY, K122E, I135T, D177E, E203EK, Q207E, R211T, F214FL, V245K, T286A, E291D, V292I, I293V, E297K, A304E, E312D, I329L, G335D, R356K, M357K, R358K, G359S, A360T, T377M, T386I, K390R, Q394HD
Kouri (2012)CU322-11CU322-11JQ585490NRTINNRTIL74V, M184VG190A, F227LV35K, T39A, E40D, K43Q, K49R, V60I, S68G, V90I, K104R, K122E, E169D, V179I, Q207X, R211RK, V245T, A272S, K277R, T286A, E297A, P313Q, I329L, Q334ED
 CU691-09CU691-09JQ585261NRTINNRTIM41L, D67N, K70S, M184V, L210W, T215F, K219QY181CK32Q, V35K, T39A, K49R, V60I, V90I, V111I, V118I, K122E, D123N, I135R, F160Y, Q197K, T200A, I202V, E203K, Q207D, H208Y, R211K, D218E, L228H, V245T, D250E, A272S, T286A, I293V, E297K, L301I, P313Q, I329VD
Reynolds (2012)E0090E0090-1JN652182AZT, 3TCNVPM184MIVV179E, Y181CT7TA, V21I, V35T, T39M, V60I, T69TA, V90I, D121C, K122E, I135T, I142V, D177E, T200A, E203EK, Q207E, R211K, V245Q, D250E, A272P, K277R, L282C, T286A, I293VD
 F0406F0406-1JN652189AZT, 3TCNVPM184VK103DN, P225HV35T, V60I, S68SG, K73KR, V90I, D121Y, K122E, I135M, D177E, I178M, T200I, Q207G, R211K, V241VA, V245K, D250E, W252WR, A272P, L282C, L283I, R284K, I293VD
 F0701F0701-1JN652190AZT, 3TCNVPM184VG190AV35T, K49R, I50T, V60I, V90I, K101Q, K122E, I132V, S162N, D177E, I178M, T200I, Q207E, V245E, D250E, A272P, K277R, L282C, T286A, I293V, E297GD
Kebe (2013)SNA3-144SNA3-144HM002510AZT, 3TCNVPM184VK101KE, Y181C, G190AV35T, K49R, I50IF, V60I, V90I, D121H, K122E, I135T, S162H, T165I, K173T, Q174K, D177E, I178L, T200A, Q207E, R211K, F214L, V245T, D250ED
Sigaloff (2013)JCR118_0JCR118_0JX182007NRTINNRTIM184VK103NV35T, T39K, K43E, K49R, V60I, S68G, V90I, D121Y, K122E, D123E, S162D, D177E, I178L, T200Q, E204D, Q207G, R211K, P243S, V245K, D250E, A272P, K275R, K277R, L282C, T286A, I293VD