Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 0130NY | 01CM.0130 | Cameroon | 2001 | HIV1 | A | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| E11D, K14R, A21T, A23V, D41N, M50I, I72V, T112V, S119T, T124A, T125A, G134D, K136Q, D167E, V201I, Y227F, L234I, S255N | S283G, D288N |
| >01CM.0130| codons 1-288 FLDGIDKAQEDHERYHSNWRTMVSDFNLPPVVAKEIVASCNKCQLKGEAIHGQVDCSPGI WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGTN FTSAAVKAACWWADIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYFRDSRDPIWKGPAK LLWKGEGAVVIQDNNDIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDEN |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| I13V, E35D, M36I, N37D, R41K, H69K, I72R, L89M |
| >01CM.0130| codons 1-99 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYD QILIEICGKKARGTVLVGPTPVNIIGRNMLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| I5V, K11T, V35T, T39K, D121Y, K122E, D123G, I135T, S162C, E169D, K173A, Q174K, D177E, G196E, Q207A, R211S, V245Q, E248D, D250Q, A272Q, V276I, T286A, E312N, G335D, M357R, G359S, E370Q, A371V, I375V, S379G, K390R, T403M, K431R, E432D, A446S, D471E, T477A, Q480H, H483Y, L491S, K512R, L517S, S519N, Q520L, Q524K, K527E, A534S, A554S |
| >01CM.0130| codons 1-560 PISPVETVPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPV FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL YEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRAKNPEIVI YQYMDDLYVGSDLEIEQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIQLPDKQSWTVNDIQKLVGKLNWASQIYQGIKIKQLCKLLRGAKALTEVIPLTEEAE LELAENREILKNPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGKYARRRSA HTNDVKQLTQVVQKVATEGIVIWGKTPKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTP PLVKLWYQLERDPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTETTNQKAELH AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESESVNLIIEKLIEKEKVYLSWVPAHK GIGGNEQVDKLVSSGIRKVL |
References
| Author | Title | Citation |
| Kijak, GH | Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa. | ARHR, 2004 |