Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 1296NG | 01CM.1296 | Cameroon | 2001 | HIV1 | CRF09_cpx | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| E11D, S24A, V31I, V37I, S39N, I72V, L101I, T112M, T124A, T125A, G134D, I135V, K136Q, V201I, T206S, L234I, D270H | S283G |
| >01CM.1296| codons 1-288 FLDGIDKAQEDHEKYHSNWRAMAADFNLPPIVAKEIIANCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKMIHTDNGSN FTSAAVKAACWWADVQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSDIKVVPRRKAKIIRHYGKQMAGDDCVAGRQDED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| L10I, I13V, K20M, E35D, M36I, N37S, R41K, L63P, H69Q, I72L, L89I |
| >01CM.1296| codons 1-99 PQITLWQRPIVTVKIGGQLMEALLDTGADDTVLEDISLPGKWKPKMIGGIGGFIKVRQYD QIPIEICGQKALGTVLVGPTPVNIIGRNILTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| K20R, V21I, V35T, T39A, V60I, D121Y, K122E, I135T, S162N, Q174K, D177E, T200A, Q207N, R211K, I244V, V245K, A272S, K281R, L283I, E291D, V292I, I293V, E297A, G335D, R356K, G359S, K366R, T386I, A400T, E404D, P421H, K431T, L452Q, V466I, D471E, Q480H, H483Y, A502V, Q509K, L517I, S519N, Q524E, E529D, A534S | G262E |
| >01CM.1296| codons 1-560 PISPIETVPVKLKPGMDGPRIKQWPLTEEKIKALTEICAEMEKEGKISKIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL YEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQNSMTKILEPFRKKNPEIVI YQYMDDLYVGSDLEIGQHRAKIEELRNHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPVKLPEKDSWTVNDIQKLVEKLNWASQIYSGIKVKQLCRLIRGTKALTDIVPLTAEAE LELAENREILKEPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKMRSA HTNDVRQLTEAVQKIATESIVIWGKIPKFKLPIQKETWETWWTDYWQATWIPEWEFVNTP HLVKLWYQLETEPIVGAETFYVDGAANRETKQGKAGYVTDRGRQKIVSLTETTNQKTELH AIYLALQDSGLEVNIVTDSQYVLGIIQAKPDKSESEIVNQIIEELIKKDKVYLSWVPAHK GIGGNEQVDKLVSAGIRKVL |
References
| Author | Title | Citation |
| Kijak, GH | Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa. | ARHR, 2004 |