Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 0001BBY | 01CM.0001 | Cameroon | 2001 | HIV1 | A | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| E11D, K14R, A21T, A23V, V31I, D41N, M50I, I72V, L101I, T112V, T124A, T125A, G134E, K136Q, V165I, D167E, V201I, L234I, D270E | S283G, D288N |
| >01CM.0001| codons 1-288 FLDGIDKAQEDHERYHSNWRTMVSDFNLPPIVAKEIVASCNKCQLKGEAIHGQVDCSPGI WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN FTSAAVKAACWWAEIQQEFGIPYNPQSQGVVESMNKELKKIIGQIREQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSDIKVVPRRKAKIIREYGKQMAGDDCVAGRQDEN |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| E35D, M36I, N37D, R41K, H69K, L89M |
| >01CM.0001| codons 1-99 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYD QILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| K11A, V21I, V35T, T39K, V60I, D121Y, K122E, D123G, I135T, K166R, E169D, K173A, Q174K, D177E, G196E, T200I, E203D, Q207A, R211S, V245Q, E248N, K277R, T286A, I293V, K311R, G335D, M357K, G359S, A371V, I375V, S379G, K390R, T403M, E432D, V435I, N447S, D471E, T473I, Q480H, L491S, K512R, S519N, Q520L, Q524K, K527E, A534S, A554S, V559I |
| >01CM.0001| codons 1-560 PISPIETVPVALKPGMDGPKIKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL YEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILDPFRAKNPEIVI YQYMDDLYVGSDLEIEQHRIKIDELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIQLPNKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTEVVPLTEEAE LELAENREILREPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGKYARKRSA HTNDVKQLTEVVQKVATEGIVIWGKTPKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTP PLVKLWYQLEKDPIIGAETFYVDGAASRETKLGKAGYVTDRGRQKVVSLTETINQKTELH AIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKEKVYLSWVPAHK GIGGNEQVDKLVSSGIRKIL |
References
| Author | Title | Citation |
| Kijak, GH | Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa. | ARHR, 2004 |