Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 0016BBY | 02CM.0016 | Cameroon | 2002 | HIV1 | F | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| S17N, V31I, M50I, L101I, T112I, T125V, K136Q, V201I, T218S, Y227F, L234I, S255N, D256E, A265V | S283G |
| >02CM.0016| codons 1-288 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGI WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN FTSTVVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYFRDSRDPIWKGPAK LLWKGEGAVVIQDNNEIKVVPRRKVKIIRDYGKQMAGDDCVAGRQDED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| L10V, I15V, G16E, K20R, E35D, M36I, P39S, R41K, K45R, I62V, L63P, H69Q, L89M |
| >02CM.0016| codons 1-99 PQITLWQRPVVTIKVEGQLREALLDTGADDTVLEDINLSGKWKPRMIGGIGGFIKVRQYD QVPIEICGQKAIGTVLVGPTPVNIIGRNMLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| V35T, D123E, K173A, Q174R, D177E, I180V, T200A, Q207E, P243A, V245Q, E248N, D250S, A272P, K275R, Q278H, T286A, E291D, I293V, E297A, Q334H, G335D, F346H, K347R, R356K, M357R, G359S, A371V, S379G, T386V, K390R, A400T, K431T, V435I, N447S, L452I, D471E, L491S, Q509H, S519N, K527Q, A534S, A554T |
| >02CM.0016| codons 1-560 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPV FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRARNPEIVV YQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQAIQLPNKSSWTVNDIQKLVGKLNWASQIYPGIRVKHLCKLLRGAKALTDVVPLTAEAE LELAENREILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPHRNLKTGKYAKRRSA HTNDVKQLTEVVQKIATEGIVIWGKVPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTP PLVKLWYQLETEPIIGAETFYVDGAASRETKIGKAGYVTDRGRQKVVSLTETTNQKTELQ AIHLALQDSGSEVNIVTDSQYALGIIQAHPDKSESELVNQIIEQLIQKEKVYLSWVPAHK GIGGNEQVDKLVSTGIRKVL |
References
| Author | Title | Citation |
| Kijak, GH | Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa. | ARHR, 2004 |