Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 0015BBY | 02CM.0015 | Cameroon | 2002 | HIV1 | CRF02_AG | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| T97A | E11D, K14R, V31I, L101I, T112V, S119T, T124A, T125A, G134D, I135V, K136T, V201I, T206S, I208L, L234I | D286N |
| >02CM.0015| codons 1-288 FLDGIDKAQEDHERYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVKVIHTDNGTN FTSAAVKAACWWADVTQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIASDLQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQNED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| T12A, I13V, K14R, I15V, K20I, E35K, M36I, R41Q, H69K, K70R, L89M |
| >02CM.0015| codons 1-99 PQITLWQRPLVAVRVGGQLIEALLDTGADDTVLEKINLPGQWKPKMIGGIGGFIKVRQYD QILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| V35T, E36D, T39L, V90I, D123E, I135V, S162A, K166Q, K173T, Q174K, D177E, T200A, Q207A, V245Q, E248N, S251I, T286A, E291D, V292I, I293V, P294T, E298K, S322T, I326V, G335D, R356K, M357K, G359S, K366R, A371V, I375V, V381I, K390R, T403M, E432D, V435A, A437V, R461K, V466I, D471E, Q480H, L491S, K512R, L517I, S519N, Q524K, K527E, E529D, A554S |
| >02CM.0015| codons 1-560 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICLEMEKEGKISKIGPENPYNTPV FAIKKKDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DKEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTQILEPFRTKNPEIVI YQYMDDLYVGSDLEIGQHRAKIEELRAHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIQLPNKDIWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLTEKAE LELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKKRSA HTNDVRQLTEVVQKVATESIIIWGKTPKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTP PLVKLWYQLEKDPIAGVETFYVDGAANRETKLGKAGYVTDKGRQKIVSLTETTNQKTELH AIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDKVYLAWVPAHK GIGGNEQVDKLVSSGIRKVL |
References
| Author | Title | Citation |
| Kijak, GH | Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa. | ARHR, 2004 |