Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 0013BBY | 02CM.0013 | Cameroon | 2002 | HIV1 | CRF02_AG | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| L74M | K14R, I72V, E96D, L101I, K111R, T112V, T124A, G134N, I135V, K136T, V201I, T206S, L234I, R269K, M275V | D286N |
| >02CM.0013| codons 1-288 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKVIMVAVHVASGYIEAEVIPAETGQDTAYFILKLAGRWPVRVIHTDNGSN FTSATVKAACWWANVTQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQVAGDDCVASRQNED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| I13V, K14R, K20I, M36I, R41K, I64M, H69K, L89M |
| >02CM.0013| codons 1-99 PQITLWQRPLVTVRIGGQLIEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYD QILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| V35T, K49R, K102E, K122E, I135V, E138A, S162A, K173T, Q174R, D177G, I178M, E194Q, G196E, T200A, I202V, Q207E, R211S, V245K, E248D, T286A, E291D, V292I, I293V, P294T, S322A, I326V, G335D, R356K, M357R, G359S, A371V, I375V, V381I, T386I, K390R, T403L, N447S, L452I, T470N, D471E, Q480H, H483Y, L491S, K512R, S519N, Q524E, E529D, A534S, A554K, K558R, V559I |
| >02CM.0013| codons 1-560 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPV FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKEKKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPSVNNATPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTRNPGMVI YQYMDDLYVGSDLQIEQHRAKVEELREHLLSWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIKLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLTEEAE LELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKRRSA HTNDVKQLTEVVQKVATESIIIWGKIPKFRLPIQKETWEAWWLEYWQATWIPEWEFVNTP PLVKLWYQLEKEPIVGAETFYVDGAASRETKIGKAGYVTDRGRQKVVSLNETTNQKTELH AIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEELIKKDKVYLSWVPAHK GIGGNEQVDKLVSKGIRRIL |
References
| Author | Title | Citation |
| Kijak, GH | Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa. | ARHR, 2004 |