Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 98USHVTN941c1 | 98_941c1 | U.S. | 1998 | HIV1 | B | PBMC | MC |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| S24A, D25N, S119T, T124N, T125V, E198D, V201I, T206S, D256E |
| >98_941c1| codons 1-288 FLDGIDKAQEEHEKYHSNWRAMAANFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGTN FTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGDRIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAK LLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| K14R, I15V, L19I, R41K, L63P | R87K |
| >98_941c1| codons 1-99 PQITLWQRPLVTIRVGGQIKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD QIPIEICGHKAIGTVLVGPTPVNIIGKNLLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| E6K, V35I, E42K, E44K, S68G, K122E, I135T, K166R, G196E, V245K, K277R, A288S, I293V, E297A, L301M, G359E, S379G, V381I, K385R, K390R, A400T, T403M, E404K, K431T, L491S, E529D |
| >98_941c1| codons 1-560 PISPIKTVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMKKKGKISKIGPENPYNTPV FAIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVI YQYMDDLYVGSDLEIEQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVVPLTAEAE MELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMREA HTNDVKQLTEAVQKIATEGIIIWGRTPKFRLPIQKETWETWWMKYWQATWIPEWEFVNTP PLVKLWYQLETEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQ AIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKDKVYLAWVPAHK GIGGNEQVDKLVSAGIRKVL |
References
| Author | Title | Citation |
| McLaughlin, S | Sequence diversity of HIV-1 genomes from the HIV vaccine trials network. | Direct Genbank Submission, 2004 |