Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| HIM519489 | HIM519489 | Chad | 1999 | HIV1 | D | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| D6S, K7Q, E13D, T112V, I113V, T124A, T125A, V201I, K211R, T218I, L234I, D253E, A265V, R269K, D279G |
| >HIM519489| codons 1-288 FLDGISQAQEEHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSN FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQIIKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQENSDIKVVPRRKVKIIKDYGKQMAGDGCVASRQDED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| E35D, M36I, N37D, R41K, D60E, I62V, I64V |
| >HIM519489| codons 1-99 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYE QVLVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| V21I, V35T, K49R, V60I, K122E, D123N, S162C, D177E, I178L, E204Q, Q207E, P243S, V245I, E248H, K249Q, D250E, A272P, Q278H, K281R, T286A, E297K, K311R, I329V, G335S, T338S, Y339W, T377L, K390R, T403M, V435I, S468P, L469F, H483N, L491P, L517V, Q524L, A554S |
| >HIM519489| codons 1-560 PISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPELVI YQYMDDLYVGSDLEIGQHRTKIEQLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQSIILPHQESWTVNDIQKLVGKLNWASQIYPGIKVKHLCRLLRGAKALTEVIPLTKEAE LELAENREILREPVHGVYYDPSKDLIAEVQKQGQSQWSWQIYQEPFKNLKTGKYARMRGA HTNDVKQLTEAVQKIALESIVIWGKTPKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTP PLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQ AINLALQDSGPEVNIVTDSQYALGIIQAQPDKSESEVVSQIIELLIKKEKVYLAWVPAHK GIGGNEQVDKLVSSGIRKVL |
References
| Author | Title | Citation |
| Vidal, N | High genetic diversity of HIV-1 strains in Chad, West Central Africa. | JAIDS, 2003 |