Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| CH3 | CH3 | Chile | 2001 | HIV1 | B | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | RTI | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| S17N, R20K, L28I, S39N, L45V, I72V, T112R, K156N, V165I, K173R, V201I, E212A, T218I, L234V, D256E | S283G |
| >CH3| codons 1-288 FLDGIDKAQEEHEKYHNNWKAMASDFNIPPVVAKEIVANCDKCQVKGEAMHGQVDCSPGI WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKRIHTDNGSN FTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQIRDQAEHLRTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIATDIQTKALQKQIIKIQNFRVYYRDSRDPVWKGPAK LLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| T12S, I15V, L19Q, E35D, M36I, R41K, K45R, R57K, Q61N |
| >CH3| codons 1-99 PQITLWQRPLVSIKVGGQQKEALLDTGADDTVLEDINLPGKWKPRMIGGIGGFIKVKQYD NILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| M41L, M184V, T215Y | K103N | K32R, V35I, V60I, K122E, I135L, T139R, Q197K, E248D, A272P, K281R, L283I, E297Q, M357T, K366R, A376T, A400T, V435I, R461K, L469I, T470D, H483L, L517I, S519N, A554S |
| >CH3| codons 1-560 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIRALIEICTELEKEGKISKIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPSLNNERPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVI YQYVDDLYVGSDLEIGKHRTKIEELRQHLLRWGFYTPDKKHQKEPPFLWMGYELHPDKWT VQPIVLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLIRGTKALTEVIPLTQEAE LELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGA HTNDVRQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTP PLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDKGRQKVVSIDDTTNQKTELQ AILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEQLIKKEKVYLAWVPAHK GIGGNEQVDKLVSSGIRKVL |
References
| Author | Title | Citation |
| Sierra, M | The analysis of near full-length genome sequences of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Chile, Venezuela and Spain reveals their relationship to diverse lineages of recombinant viruses related to CRF12_BF. | Infect Genet Evol, 2004 |