Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| SE9010 | SE9010 | Sweden | 1995 | HIV1 | G | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | Unknown | 52 |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| E13D, K14R, S24N, V31I, L101I, T112I, T124A, T125A, V126A, K136Q, V165I, V201I, T206S, L234I, D256E | S283G |
| >SE9010| codons 1-288 FLDGIDKAQEEHDRYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN FTSAAAKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQIRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| D67N, T69D, K70R, T215F | K219Q | A98G | E6D, K20R, V35T, V60I, L109I, K122E, D123S, K173T, D177E, G196E, T200A, I202V, Q207E, R211K, V245Q, E248D, D250E, A272P, E291D, V292I, I293V, E297A, E300Q, Q334P, F346Y, M357V, R358K, G359S, T377S, S379G, K390R, A400T, K431T, V435P, F440Y, V467I, S468T, D471E, H483Q, L491S, K512R, E516D, S519N, K527Q, K530R, A534T, A554N | K281KN |
| >SE9010| codons 1-560 PISPIDTVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPI FAIKKKNSDRWRKLVDFRELNKRTQDFWEVQLGIPHPGGLKKKKSVTVIDVGDAYFSVPL DESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTQNPEIVI YQYMDDLYVGSDLEIEQHRAKVEELREHLLKWGFFTPDQKHQKEPPFLWMGYELHPDKWT VQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCNLLRGTKALTDIVPLTAEAQ LELAENREILKEPVHGVYYDPSKDLIAEIQKQGPGQWTYQIYQEPYKNLKTGKYARVKSA HTNDVKQLTEAVQKIASEGIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTP PLVKLWYQLETEPIPGAETYYVDGAANRETKLGKAGYVTDRGRQKVITLTETTNQKTELQ AIQLALQDSGSEVNIVTDSQYALGIIQAQPDRSESDLVNQIIEQLIQKERVYLTWVPAHK GIGGNEQVDKLVSNGIRKVL |
References
| Author | Title | Citation |
| Wilbe, K | Characterization of novel recombinant HIV-1 genomes using the branching index. | Virology, 2003 |