Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 01IC_PCI123 | 01_PCI123 | Cote d'Ivoire | 2001 | HIV1 | CRF02_AG | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| E11D, K14R, S24N, V31I, K42R, M50I, I72V, I84M, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, I217V, T218S, L234I, D256E | S283G |
| >01_PCI123| codons 1-288 FLDGIDKAQEDHERYHSNWRAMANDFNLPPIVAKEIVASCDRCQLKGEAIHGQVDCSPGI WQLDCTHLEGKVILVAVHVASGYMEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN FTSAAVKAACWWANVTQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQVSKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| I13V, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M |
| >01_PCI123| codons 1-99 PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYD QIPIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| V21I, K32R, V35T, V60I, K122E, D123N, I135T, E169D, K173E, Q174K, D177E, T200I, Q207E, V245Q, K277R, E291D, V292I, I293V, P294T, F346Y, M357I, R358K, G359S, T377L, K390R, A400T, K431T, E432D, V435G, D471E, Q480Y, H483F, L491S, K512R, L517I, S519N, K527G, E529D, A534S, A554S |
| >01_PCI123| codons 1-560 PISPIETVPVKLKPGMDGPKIKQWPLTEEKIRALTEICTEMEKEGKISKIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFREKNPEIVI YQYMDDLYVGSDLEIGQHRIKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTDIVTLTEEAE LELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPYKNLKTGKYARIKSA HTNDVKQLTEAVQKIALESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTP PLVKLWYQLETDPIGGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELY AIFLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIGKDKVYLSWVPAHK GIGGNEQVDKLVSSGIRKVL |
References
| Author | Title | Citation |
| Toni, T | Presence of CRF09_cpx and complex CRF02_AG/CRF09_cpx recombinant HIV type 1 strains in Cote d'Ivoire, West Africa. | ARHR, 2005 |