Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
99US_MSC4068 | 99US_4068 | U.S. | 1999 | HIV1 | D | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | None | NA |
Integrase Sequence
INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
S17N, M50L, I72V, T112I, I113V, T124A, T125A, V201I, A205S, T206S, L234I, D256E | S283G |
>99US_4068| codons 1-288 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGI WQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKIVHTDNGSN FTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIISSDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
I13V, L33V, M36I, R41K, I64V, I72V |
>99US_4068| codons 1-99 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVVEEINLPGKWKPKMIGGIGGFIKVRQYD QILVEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
V35T, K49R, V60I, K122E, D177E, I178M, T200L, Q207E, R211K, V245K, D250E, A272P, K277R, L282C, A288T, I293V, E297Q, A304E, D324E, G335D, P345Q, F346Y, R356K, A360T, E370A, T377Q, S379C, K390R, A400T, E404D, H483N, K512R, S519N, A534S, E546D, A554N, V559I |
>99US_4068| codons 1-560 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEMVI YQYMDDLYVGSDLEIGQHRLKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCLRGTKTLTEVVPLTQEAE LELEENREILKEPVHGVYYDPSKELIAEIQKQGQDQWTYQIYQEQYKNLKTGKYAKMRGT HTNDVKQLTAAVQKIAQECIVIWGKTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTP PLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQ AINLALQDSGLEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQLIKKEKVYLSWVPAHK GIGGNDQVDKLVSNGIRKIL |
References
Author | Title | Citation |
Tovanabutra, S | Characterization of complete HIV type 1 genomes from non-B subtype infections in U.S. military personnel. | ARHR, 2005 |