Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 01BR087 | 01BR087 | Brazil | 2001 | HIV1 | F | PBMC | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | PI|RTI | NA |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| S17N, I72V, I84L, L101I, S119P, T124A, T125A, K136Q, H171Y, V201I, A205S, K211R, T218I, L234V, D256E | S283G |
| >01BR087| codons 1-288 FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKVILVAVHVASGYLEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPN FTSAAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEYLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIISTDIQTRELQKQIIKIQNFRVYYRDSRDPVWKGPAK LLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| M46L, V82A | I15V, E35D, M36I, R41K, R57K, D60E, Q61D, I62V, L89M |
| >01BR087| codons 1-99 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDINLPGKWKPKLIGGIGGFIKVKQYE DVLIEICGHKAIGTVLVGPTPANIIGRNMLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| M41L, D67N, K70R, T215Y | E6D, K20R, V35M, T39A, D123E, S162C, E169D, K173A, Q174K, I178L, Q207E, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297A, V317A, R356K, G359S, A371T, T377L, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, R461K, V466A, T470I, D471E, T477A, H483Q, L491S, S519N, Q524E, E529D, A534S, V559I |
| >01BR087| codons 1-560 PISPIDTVPVKLKPGMDGPRVKQWPLTEEKIKALMEICAELEKEGKISKIGPENPYNTPV FAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRAKNPDLVI YQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWT VQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTAEAE LELAENREILKEPVHGAYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRSA HTNDVKQLTETVQKIALESIVIWGKTPKFRLPILKETWDTWWTEYWQATWIPEWEFVNTP PLVKLWYQLETEPIAGAETFYVDGASNRETKKGKAGYVTDKGRQKAVSLIETTNQKAELQ AIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEELIKKDKVYLSWVPAHK GIGGNEQVDKLVSAGIRKIL |
References
| Author | Title | Citation |
| Sanabani, S | Analysis of the near full length genomes of HIV-1 subtypes B, F and BF recombinant from a cohort of 14 patients in Sao Paulo, Brazil. | Infect Genet Evol, 2006 |