Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| 99US_MSC1134 | 99US_1134 | U.S. | 1999 | HIV1 | CRF02_AG | Plasma | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| V11I | I13V, K20I, M36I, R41K, L63LP, C67CY, H69K, I72M, L89I |
| >99US_1134| codons 1-99 PQITLWQRPLITVKIGGQLIEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYD QIPIEIYGKKAMGTVLVGPTPVNIIGRNILTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| V35T, E36D, T39A, E40D, K49R, V60I, I135V, K173I, Q174K, D177E, T200A, E204K, Q207E, R211K, V245E, S251C, K277R, K281R, T286A, E291D, V292I, I293V, P294T, P321S, S322T, I326V, G335D, R356K, M357K, G359S, A371V, I375V, K390R, K395R, T403M, K431R, E432D, T470N, D471E, Q480H, L491S, K512R, S519N, Q520L, Q524K, K527E, E529D, A534S, A554S |
| >99US_1134| codons 1-560 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICADMEKEGKISRIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEIVI YQYMDDLYVGSDLEIGQHRAKIEKLREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWT VQPIELPEKDCWTVNDIQKLVGKLNWASQIYAGIKVRQLCRLLRGAKALTDIVTLTEEAE LELAENREILKEPVHGVYYDSTKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKKRSA HTNDVKQLTEVVQKVATESIVIWGKTPKFRLPIQRETWEAWWMEYWQATWIPEWEFVNTP PLVKLWYQLERDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELH AIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNLIIEKLIEKDKVYLSWVPAHK GIGGNEQVDKLVSSGIRKVL |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| K14R, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E | S283G |
| >99US_1134| codons 1-287 FLDGIDKAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGI WQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSN FTSAAVKAACWWANVTQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDE |
References
| Author | Title | Citation |
| Tovanabutra, S | Characterization of complete HIV type 1 genomes from non-B subtype infections in U.S. military personnel. | ARHR, 2005 |