Isolate Data
| Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
| HIM519488 | HIM519488 | Chad | 1999 | HIV1 | D | Plasma | None |
Treatment History
| Order | Regimen | Weeks |
| 1 | None | NA |
Protease Sequence
| PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
| I15V, L19Q, E35D, M36I, R41K, D60E, L63P, I64V, K70T, I72V |
| >HIM519488| codons 1-99 PQITLWQRPLVTIKVGGQQKEALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYE QIPVEICGHTAVGTVLVGPTPVNIIGRNLLTQIGCTLNF |
RT Sequence
| NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
| V35T, K49R, V60I, V111I, K122A, I142T, S162C, E169D, D177E, I178L, T200A, E204K, Q207E, R211K, F214L, V245T, D250E, A272P, K281R, T286A, A288T, I293V, E297K, K311R, I329V, Y339W, M357I, R358K, A376S, T377L, K390R, T403M, V435M, S468P, L469F, H483N, L491S, L517I, A554S |
| >HIM519488| codons 1-560 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPI FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDIGDAYFSVPL DADFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQCSMTKILDPFRKQNPELVI YQYMDDLYVGSDLEIGQHRAKIEKLREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWT VQPITLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLRGAKTLTEVVPLTKEAE LELAENREILREPVHGVYYDPSKDLIAEVQKQGQGQWTWQIYQEPFKNLKTGKYARIKGA HTNDVKQLTEAVQKISLESIVIWGKTPKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTP PLVKLWYQLEKEPIMGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQ AINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQLIKKEKVYLAWVPAHK GIGGNEQVDKLVSSGIRKVL |
Integrase Sequence
| INIMajorDRMs | INIMinorDRMs | Polys | UnusualMuts |
| D6S, K7Q, E10D, E13D, L45I, K71Q, I113V, S119R, T124A, G163E, V201I, K211R, L234I, D253E, D279G |
| >HIM519488| codons 1-288 FLDGISQAQDEHDKYHSNWRAMASDFNLPPVVAKEIVASCDKCQIKGEAMHGQVDCSPGI WQLDCTHLEGQIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGRN FTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV FIHNFKRKGGIGGYSAGERIIDIIATDIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAK LLWKGEGAVVIQENSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED |
References
| Author | Title | Citation |
| Vidal, N | High genetic diversity of HIV-1 strains in Chad, West Central Africa. | JAIDS, 2003 |