Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
CA3935 | CA38111 | U.S. | 2003 | HIV1 | B | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | D4T | 38 |
2 | D4T+RTV+SQV | 31 |
3 | 3TC+D4T+IDV | 174 |
4 | 3TC+D4T+NFV | 96 |
5 | APV+DLV+EFV+LPV+TDF | 4 |
6 | APV+DLV+EFV+TDF | 53 |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
M41L, D67N, M184V, L210W, T215Y | V75M, K219Q | Y181C, G190A | K101N | K20R, V21I, T39A, E44D, V60I, R83K, K103R, V118I, K122E, I135T, K173R, Q174K, N175Y, G196E, H208Y, R211K, D218E, A272P, I293V |
>CA38111| codons 1-300 PISPIETVPVKLKPGMDGPRIKQWPLTEEKIKALVEICAELEKDGKISKIGPENPYNTPI FAIKKKNSTKWRKLMDFRELNKKTQDFWEVQLGIPHPAGLNKRKSVTVLDVGDAYFSIPL DEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRRKYPDIVI CQYVDDLYVASDLEIEQHRTKIEELRQYLWKWGFYTPEQKHQKEPPFLWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAE |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
I54V, V82F, L90M | G73S | L10I, L63P, A71V, V77I, I93L |
>CA38110| codons 1-99 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFVKVRQYD QIPIEICGHKVISTVLIGPTPFNIIGRNLMTQLGCTLNF |
References
Author | Title | Citation |
Rhee, SY | HIV-1 protease and reverse transcriptase mutations: Correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance. | J Infect Dis, 2005 |
Rhee, SY | Predictive value of HIV-1 genotypic resistance test interpretation algorithms. | J Infect Dis, 2009 |