Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
CA1158 | CA34949 | U.S. | 2002 | HIV1 | B | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | AZT | 42 |
2 | AZT+DDI | 10 |
3 | 3TC+AZT+IDV | 44 |
4 | AZT+IDV+NVP | 9 |
5 | 3TC+AZT+NFV+SQV | 35 |
6 | None | 10 |
7 | ADV+DDI+EFV+RTV+SQV | 24 |
8 | NFV+SQV | 15 |
9 | None | 14 |
10 | 3TC+ADV+AZT+EFV | 25 |
11 | None | 58 |
12 | 3TC+D4T+EFV | 9 |
13 | 3TC+APV+D4T+DDI+LPV | 87 |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
M41L, L210W, T215Y | K103N, Y188L | P1L, K43N, K122E, E138A, I142V, S162C, R211Q, L228R, V245E, K277R, Q278H, I293V, E297A |
>CA34949| codons 1-300 LISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELENEGKISKIGPENPYNTPV FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPSINNATPGVRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVI YQYMDDLLVGSDLEIGQHRTKIEELRQHLWQWGFYTPDKKHQKEPPFRWMGYELHPDKWT VQPIELPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRHLCKLLRGTKALTEVVPLTAEAE |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
I54V, V82A, L90M | L23I, L33F, F53L | L10I, E35D, M36V, R57K, D60E, I62V, L63P, A71V, I93L |
>CA33933| codons 1-99 PQITLWQRPIVTIKIGGQLKEAILDTGADDTVFEDVNLPGRWKPKMIGGIGGLVKVKQYE QVPIEICGHKVIGTVLVGPTPANIIGRNLMTQLGCTLNF |
References
Author | Title | Citation |
Rhee, SY | HIV-1 protease and reverse transcriptase mutations: Correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance. | J Infect Dis, 2005 |