<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Isolate Data

Patient Isolate Region Year Species Subtype Source Clone Method

Treatment History
Order Regimen Weeks
1 None NA

Integrase Sequence
INIMajorDRMs INIMinorDRMs Polys UnusualMuts
T66A   S17N, R20K, V31I, L101I, T112I, T124A, T125A, K136Q, F139S, G163E, K211R, T218I, L234I, R269G, D278A S283G
>CN0896| codons 1-288
FLDGIDKAQEEHEKYHNNWKAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGI
WQLDCAHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSN
FTSAAVKAACWWAGIQQESGIPYNPQSQGVVESMNKELKKIIEQVRDQAEHLKTAVQMAV
FIHNFKRKGGIGGYSAGERIVDIIATDIQTRELQKQIIKIQNFRVYYRDSRDPIWKGPAK
LLWKGEGAVVIQDNSDIKVVPRRKAKIIGDYGKQMAGADCVAGRQDED

Protease Sequence
PIMajorDRMs PIMinorDRMs Polys UnusualMuts
    V11G, T12S, I15V, L19I, M36V, R41K, K43E, D60E, L63P, H69K, K70R, I93L L10G
>CN0896| codons 1-99
PQITLWQRPGGSIKVGGQIKEALLDTGADDTVLEEVNLPGKWEPKMIGGIGGFIKVRQYE
QIPIEICGKRAIGTVLVGPTPVNIIGRNLLTQLGCTLNF

RT Sequence
NRTIMajorDRMs NRTIMinorDRMs NNRTIMajorDRMs NNRTIMinorDRMs Polys UnusualMuts
        V35I, T39N, S48T, E53D, V60I, T69S, I135V, T200I, Q207E, P243L, V245K, S251V, A272P, K277R, T286A, I293V, D324E, Q334H, G335D, R356K, G359T, T377Q, T386I, A400T, E404D, E432D, V435A, A437V, L452I, Q464K, T473A, H483Y, L484I, L491S, S519N, K527S, K530R, A534S, A554N  
>CN0896| codons 1-560
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICNEMEKEGKITKIGPDNPYNTPI
FAIKKKDSSKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL
DKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVI
YQYMDDLYVGSDLEIGQHRIKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWT
VQLIKLPEKDVWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAE
LELAENREILKEPVHGVYYDPSKELIAEIQKQGHDQWTYQIYQEPFKNLKTGKYAKMRTA
HTNDVKQLTEAVQKIAQESIVIWGKIPKFKLPIQKETWETWWTDYWQATWIPEWEFVNTP
PLVKLWYQLEKDPIAGVETFYVDGAANRETKIGKAGYVTDRGRKKVVSLTDTANQKTELQ
AIYIALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLISKERVYLSWVPAHK
GIGGNEQVDKLVSNGIRKVL

References
Author Title Citation
Zeng, H Emergence of a new HIV type 1 CRF01_AE variant in Guangxi, southern China. ARHR, 2012