Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
SK8020-M18 | SK8020-M18 | Cameroon | 2007 | HIV1 | CRF02_AG | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | 3TC+D4T+NVP | NA |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
M184V, T215TNSY | Y181C | V35T, K43KN, K49R, S68SG, K122KE, I135V, S162D, K173I, Q174K, V179I, T200A, Q207E, R211K, H221Y, P243T, V245Q, K281R, T286A, E291D, V292I, I293V, P294T |
>SK8020-M18| codons 1-320 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMENEGKISRIGPENPYNTPV FAIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQDSMTKILEPFRIKNPDIII CQYVDDLYVGSDLEIGQHRAKIEELREHLLKWGFYTPDKKYQKEPPFLWMGYELHPDKWT VQTIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDIVTLTEEAE LELAENREILKEPVHGVYYD |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
T12A, I13V, K14R, I15V, K20I, M36I, R41K, I64M, H69K, L89M |
>SK8020-M18| codons 1-99 PQITLWQRPLVAVRVGGQLIEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYD QILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNF |
References
Author | Title | Citation |
Aghokeng, AF | High failure rate of the ViroSeq HIV-1 genotyping system for drug resistance testing in Cameroon, a country with broad HIV-1 genetic diversity | J Clin Microbiol, 2011 |