Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
CA5481 | CA16977 | U.S. | 2000 | HIV1 | B | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | AZT | 109 |
2 | AZT+DDC | 65 |
3 | AZT+DDC+SQV | 65 |
4 | D4T+DDI+NFV+NVP | 4 |
5 | D4T+DDI+NFV | 35 |
6 | 3TC+AZT+IDV+RTV | 111 |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
G48V, I54PT, V82A | L10I, I64V, A71V, T74S, V77I |
>CA16977| codons 1-99 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIVGIGGFPKVRQYD QILVEICGHKVIGSVLIGPTPANIIGRNLLTQIGCTLNF |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
M41L, D67N, K70R, M184V, L210W, T215Y | K219Q | T39N, E44D, K122E, S134SR, E138EG, E203K, Q207E, H208Y, R211K, K223E, L228H, K277R, T286A, E297K |
>CA16869| codons 1-300 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICNELEKDGKISKIGPENPYNTPV FAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPRINNGTPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVI YQYVDDLYVGSDLEIGQHRTKIKELREYLWKWGFYTPDQKHQEEPPFHWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTEVIPLTKEAE |
References
Author | Title | Citation |
Gonzales, MJ | Protease and reverse transcriptase mutation patterns in HIV-1 isolates from heavily treated persons: Comparison of isolates from northern California with isolates from other regions. | ARHR, 2003 |
Rhee, SY | HIV-1 protease and reverse transcriptase mutations: Correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance. | J Infect Dis, 2005 |
Rhee, SY | Predictive value of HIV-1 genotypic resistance test interpretation algorithms. | J Infect Dis, 2009 |