<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Isolate Data

Patient Isolate Region Year Species Subtype Source Clone Method
CA6485 CA16013 U.S. 2000 HIV1 B Plasma None

Treatment History
Order Regimen Weeks
1 AZT 28
2 3TC+AZT 67
3 3TC+AZT+IDV 28
4 3TC+AZT+RTV+SQV 14
5 3TC+D4T+NFV+SQV 40
6 D4T+NFV+SQV 43
7 3TC+AZT+DDI+IDV 14
8 EFV+ABC+NFV+SQV 31
9 3TC+ABC+D4T+APV 20

RT Sequence
NRTIMajorDRMs NRTIMinorDRMs NNRTIMajorDRMs NNRTIMinorDRMs Polys UnusualMuts
M41L, D67N, K70R, L74I, M184V, T215F V75M, K219E L100I, K103N   K20R, V60I, T69TN, K122E, S162SN, D177N, T200I, R211K, D218E, L228H, A272P, K277R, A288AS  
>CA16013| codons 1-303
PISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPI
FAIKKKNSNRWRKIMDFRELNKRTQDFWEVQLGIPHPAGIKKNKSVTVLDVGDAYFSVPL
DEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQNSMTKILEPFRKQNPNIVI
YQYVDDLYVGSDLEIGQHRIKIEELRQHLLKWGFFTPEEKHQKEPPFHWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKSLTEVIPLTEEAE
LEL

Protease Sequence
PIMajorDRMs PIMinorDRMs Polys UnusualMuts
I84V, L90M V11I, G73S L10I, I15V, K20I, E35D, I62V, L63P, A71V, P79A, I85IV  
>CA16275| codons 1-99
PQITLWQRPIITIKVGGQLIEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD
QVPIEICGHKVISTVLVGATPVNVVGRNLMTQIGCTLNF

References
Author Title Citation
Gonzales, MJ HIV-1 reverse transcriptase and protease subtypes: Classification, amino acid mutation patterns, and prevalence in a northern California clinic-based population. J Infect Dis, 2001
Rhee, SY HIV-1 protease and reverse transcriptase mutations: Correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance. J Infect Dis, 2005