<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Isolate Data

Patient Isolate Region Year Species Subtype Source Clone Method
CR129 US2006CR129 U.S. 2006 HIV1 B Plasma None

Treatment History
Order Regimen Weeks
1 None NA

Protease Sequence
PIMajorDRMs PIMinorDRMs Polys UnusualMuts
    K20R, E35D, M36L, N37D, I62V, L63S, I64V, I72V  
>US2006CR129| codons 1-99
PQITLWQRPLVTIKIGGQLREALLDTGADDTVLEDLDLPGRWKPKMIGGIGGFIKVRQYD
QVSVEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF

RT Sequence
NRTIMajorDRMs NRTIMinorDRMs NNRTIMajorDRMs NNRTIMinorDRMs Polys UnusualMuts
M41L, L210LW, T215Y   K103S, V106A   V35IMT, T39TA, K43KN, D86E, V118VI, I142T, I202V, H221HY, K223KQ, V245VM, A272S, R284RK, T286A, I293IV, E297A E203EDKN
>US2006CR129| codons 1-305
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICAELENEGKISKIGPENPYNTPV
FAIKKKDSTKWRKLVDFRELNKRTQEFWEVQLGIPHPAGLKKSKSATVLDVGDAYFSIPL
DKDFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVI
YQYMDDLYVGSDLEIGQHRTKVNELRQHLWRWGFYTPDKKYQQEPPFLWMGYELHPDKWT
VQPIMLPEKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLLKGAKALTEVVPLTAEAE
LELAE

References
Author Title Citation
Smith, DM A public health model for the molecular surveillance of HIV transmission in San Diego, California. AIDS, 2009