Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
78 | 03p78-2 | Germany | 2003 | HIV1 | B | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | AZT | 163 |
2 | DDI | 36 |
3 | DDI+SQV | 5 |
4 | 3TC+DDI+SQV | 9 |
5 | 3TC+D4T+SQV | 17 |
6 | 3TC+D4T+RTV | 24 |
7 | D4T+RTV | 22 |
8 | D4T+RTV+SQV | 59 |
9 | ABC+DDI+EFV | 182 |
10 | ABC+DDI+TDF | 66 |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
M41L, L74V, Y115YF, M184MV, L210W, T215Y | K219N | L100LI, K103N, V106VA | F227FL | V35M, T39A, K43E, V90VI, A98S, V118I, K122E, I135T, G196E, T200A, I202V, H221HY, A272P, K275KR, I293V, K311R, Q334E |
>03p78-2| codons 1-335 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALMEICAELEEEGKISKIGPENPYNTPV FAIKKKDSTKWRKVVDFRELNKRTQDFWEIQLGIPHPSGIKKNKSATVLDVGDAFFSIPL DEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVI YQYVDDLYVGSDLEIEQHRAKVEELRQHLWRWGFYTPDNKYQKEPPLLWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIRVKQLCKLLRGTKALTEVVPLTEEAE LELAENREILREPVHGVYYDPSKDLIAEIQKQGEG |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
V82VA | L33F | L10V, I13V, K14R, G16A, M36I, N37D, R57K, L63E, I64IV, E65D, C67CY, V77VI |
>03p78-2| codons 1-99 PQITLWQRPVVTVRIAGQLKEALLDTGADDTVFEEIDLPGRWKPKMIGGIGGFIKVKQYD QIEVDIYGHKAIGTVLIGPTPANIIGRNLLTQIGCTLNF |
References
Author | Title | Citation |
Rosen-Zvi, M | Selecting anti-HIV therapies based on a variety of genomic and clinical factors. | Bioinformatics, 2008 |