Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
CA5632 | CA13913 | U.S. | 2000 | HIV1 | B | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | Unknown | NA |
2 | AZT+NFV+NVP | 1 |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
M41L, L210LW, T215Y | V106A | F227FL | K43KQ, E44ED, K104KR, L109LV, K122E, H208HY, R211RK, D218DE, A272P, K277R, Q278H, E297K | I293GV, E300EV |
>CA13913| codons 1-300 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEQDGKISKIGPENPYNTPV FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKRSATVVDVGDAYFSVPL DEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVI YQYMDDLYVGSDLEIGQHRTKIEELRQYLWKWGFYTPEKKHQKEPPLLWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRHLCKLLRGTKALTEVGPLTKEAV |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
M46I, I84V, L90M | G73S | I15V, K20I, R57K, L63P, H69K, A71V, I72ILM, V77VI |
>CA13978| codons 1-99 PQITLWQRPLVTIKVGGQLIEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVKQYD QIPIEICGKKVMSTVLIGPTPVNVIGRNLMTQIGCTLNF |
References
Author | Title | Citation |
Gonzales, MJ | HIV-1 reverse transcriptase and protease subtypes: Classification, amino acid mutation patterns, and prevalence in a northern California clinic-based population. | J Infect Dis, 2001 |
Rhee, SY | HIV-1 protease and reverse transcriptase mutations: Correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance. | J Infect Dis, 2005 |