Isolate Data
Patient | Isolate | Region | Year | Species | Subtype | Source | Clone Method |
CA5481 | CA13556 | U.S. | 1999 | HIV1 | B | Plasma | None |
Treatment History
Order | Regimen | Weeks |
1 | AZT | 109 |
2 | AZT+DDC | 65 |
3 | AZT+DDC+SQV | 65 |
4 | D4T+DDI+NFV+NVP | 4 |
5 | D4T+DDI+NFV | 35 |
6 | 3TC+AZT+IDV+RTV | 83 |
Protease Sequence
PIMajorDRMs | PIMinorDRMs | Polys | UnusualMuts |
G48V, I54T, V82A | L10I, I64V, A71V, T74S, V77I |
>CA13556| codons 1-99 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIVGIGGFTKVRQYD QILVEICGHKVIGSVLIGPTPANIIGRNLLTQIGCTLNF |
RT Sequence
NRTIMajorDRMs | NRTIMinorDRMs | NNRTIMajorDRMs | NNRTIMinorDRMs | Polys | UnusualMuts |
M41L, D67N, K70R, M184V, L210W, T215Y | K219Q | T39N, E44D, K122E, E203K, Q207E, H208Y, R211K, K223E, L228H, I270IV, K277R, E297K | N136NT, V276VG, T286AG |
>CA13505| codons 1-303 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICNELEKDGKISKIGPENPYNTPV FAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL DEDFRKYTAFTIPSITNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVI YQYVDDLYVGSDLEIGQHRTKIKELREYLWKWGFYTPDQKHQEEPPFHWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQVYAGIKGRQLCKLLRGAKALTEVIPLTKEAE LEL |
References
Author | Title | Citation |
Gonzales, MJ | HIV-1 reverse transcriptase and protease subtypes: Classification, amino acid mutation patterns, and prevalence in a northern California clinic-based population. | J Infect Dis, 2001 |
Rhee, SY | HIV-1 protease and reverse transcriptase mutations: Correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance. | J Infect Dis, 2005 |