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Mutation Scoring 240 380

Sequence Quality Assessment

Gene QA Problem Codons PR Stop Codons, Frame Shifts: PR B,D,H,V,N: PR Unusual Residues:

Gene QA Problem Codons RT Stop Codons, Frame Shifts: RT B,D,H,V,N: RT Unusual Residues:

Blue lines indicate differences from consensus B; tall blue lines indicate sites associated with drug resistance.     Red lines indicate QA problems.

Summary Data

Sequence includes PR: codons: - Sequence includes RT: codons: -

There are no insertions or deletions

Subtype and % similarity to closest reference isolate: PR: (%) RT: (%)

   AA Insertion:  codon      AA:      NA:

1. Shift of length nucleic acids at codon in

Drug Resistance Interpretation

PI Major Resistance Mutations: PI Minor Resistance Mutations: PR Other Mutations: 10 Protease Inhibitors

PR Comments

Drug Resistance Interpretation

NRTI Resistance Mutations: NNRTI Resistance Mutations: RT Other Mutations: 20 Nucleoside RTI 10 Non-Nucleoside RTI

RT Comments

There is a reading frame shift! Please examine the sequence carefully. The presence of a reading frame shift (insertions or deletions that are not multiples of 3 NA) suggests the possibility of a sequencing error. Reading frame shifts in this sequence are shown below. A region of the underlying raw alignment text on either side of the reading frame shift is also shown.

1. Shift of length nucleic acids at codon in

None , % %

Susceptible Potential low-level resistance Low-level resistance Intermediate resistance High-level resistance

Total:

http://hivdb.stanford.edu/cgi-bin/GetResiData.cgi?pos= &drug= &class= &drug1=any